Browse Element(s) Details


Os.18583.1.S1_at

Description gb:AK073783.1
DB_XREF= gi:32983806
TID=Os.18583.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18583 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0701D05.20 (P0701D05.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068H14, full insert sequence.
FL= gb:AK099378.1 gb:AK073783.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0726011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07212OsAffx.23145.1.S1_s_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.18398.1.S1_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212OsAffx.23145.1.S1_at10/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.20407.1.S1_at1/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07224NANA1+3409051..3410420NA
LOC_Os01g07240Os.54072.1.S1_x_at11/111+3411667..3412767expressed protein
LOC_Os01g07250Os.37707.2.S1_x_at11/111+3419175..3422288Saposin-like type B, region 1 family protein, expressed
LOC_Os01g07250Os.37707.1.S1_at11/111+3419175..3422288Saposin-like type B, region 1 family protein, expressed
LOC_Os01g07260Os.18583.2.S1_x_at11/111+3422543..3426375expressed protein
LOC_Os01g07260Os.18583.2.S1_at11/111+3422543..3426375expressed protein
LOC_Os01g07260Os.18583.1.S1_at11/111+3422543..3426375expressed protein
LOC_Os01g07270OsAffx.22756.2.S1_x_at2/111+3427351..3427725transposon protein, putative, unclassified
LOC_Os01g07270OsAffx.25729.2.S1_x_at1/111+3427351..3427725transposon protein, putative, unclassified
LOC_Os01g07280OsAffx.22756.3.S1_at10/111+3428408..3432420Leucine Rich Repeat family protein, expressed
LOC_Os01g07289NANA1+3433444..3434022NA
LOC_Os01g07300Os.1665.1.S1_a_at11/111+3441961..3443395expressed protein
LOC_Os01g07300Os.1665.2.S1_x_at11/111+3441961..3443395expressed protein
LOC_Os01g07310Os.9898.1.S1_at11/111+3443739..3446984integral membrane protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18583.1.S1_at--133--6211Chr01:3422741..3422765 (25 bp)
GAGGCTACAATGAGATGAGATCACA
LOC_Os01g07260
Os.18583.1.S1_at--150--3431Chr01:3422718..3422742 (25 bp)
CAGTAAAATGTGCTTGTAAAATCCA
LOC_Os01g07260
Os.18583.1.S1_at--448--7051Chr01:3422703..3422727 (25 bp)
GTAAAATCCACTTGTGGCCGTGGCC
LOC_Os01g07260
Os.18583.1.S1_at--134--8431Chr01:3422688..3422712 (25 bp)
GGCCGTGGCCCAATGTTATGTGTAT
LOC_Os01g07260
Os.18583.1.S1_at--859--8391Chr01:3422682..3422706 (25 bp)
GGCCCAATGTTATGTGTATACCACT
LOC_Os01g07260
Os.18583.1.S1_at--632--7431Chr01:3422669..3422693 (25 bp)
GTGTATACCACTAGGGTCTAAAATC
LOC_Os01g07260
Os.18583.1.S1_at--211--3091Chr01:3422642..3422666 (25 bp)
AATCAAGATGTGGATCTGCAACATC
LOC_Os01g07260
Os.18583.1.S1_at--588--3851Chr01:3422627..3422651 (25 bp)
CTGCAACATCTTCTGTGATCCTATG
LOC_Os01g07260
Os.18583.1.S1_at--242--4431Chr01:3422591..3422615 (25 bp)
GCCATTTGATAAGTTATCTGACCTG
LOC_Os01g07260
Os.18583.1.S1_at--1160--10151Chr01:3422577..3422601 (25 bp)
TATCTGACCTGAAAAGCATCTCTTG
LOC_Os01g07260
Os.18583.1.S1_at--1052--1531Chr01:3422563..3422587 (25 bp)
AGCATCTCTTGCAATACCTGTGAAA
LOC_Os01g07260
Target Sequence 
GAGGCTACAATGAGATGAGATCACAGTAAAATGTGCTTGTAAAATCCACTTGTGGCCGTGGCCCAATGTTATGTGTATAC
CACTAGGGTCTAAAATCTAAATCAAGATGTGGATCTGCAACATCTTCTGTGATCCTATGGAAGTATNAATGCCATTTGAT
AAGTTATCTGACCTGAAAAGCATCTCTTGCAATACCTGTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18583.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis