Browse Element(s) Details


Os.1665.1.S1_a_at

Description gb:AB051107.1
DB_XREF= gi:19071827
GEN=RIP1
TID=Os.1665.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1665 (NCBI UniGene Cluster)
DEF=Oryza sativa RIP1 mRNA for ribosome inactivating protein 1, complete cds.
PROD=ribosome inactivating protein 1
FL= gb:AB051107.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0730011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07250Os.37707.2.S1_x_at11/111+3419175..3422288Saposin-like type B, region 1 family protein, expressed
LOC_Os01g07250Os.37707.1.S1_at11/111+3419175..3422288Saposin-like type B, region 1 family protein, expressed
LOC_Os01g07260Os.18583.2.S1_x_at11/111+3422543..3426375expressed protein
LOC_Os01g07260Os.18583.2.S1_at11/111+3422543..3426375expressed protein
LOC_Os01g07260Os.18583.1.S1_at11/111+3422543..3426375expressed protein
LOC_Os01g07270OsAffx.22756.2.S1_x_at2/111+3427351..3427725transposon protein, putative, unclassified
LOC_Os01g07270OsAffx.25729.2.S1_x_at1/111+3427351..3427725transposon protein, putative, unclassified
LOC_Os01g07280OsAffx.22756.3.S1_at10/111+3428408..3432420Leucine Rich Repeat family protein, expressed
LOC_Os01g07289NANA1+3433444..3434022NA
LOC_Os01g07300Os.1665.1.S1_a_at11/111+3441961..3443395expressed protein
LOC_Os01g07300Os.1665.2.S1_x_at11/111+3441961..3443395expressed protein
LOC_Os01g07310Os.9898.1.S1_at11/111+3443739..3446984integral membrane protein, putative, expressed
LOC_Os01g07320OsAffx.10952.2.S1_s_at11/111+3452056..3452861hypothetical protein
LOC_Os01g07320OsAffx.10952.2.S1_at11/111+3452056..3452861hypothetical protein
LOC_Os01g07320OsAffx.10952.1.S1_at1/111+3452056..3452861hypothetical protein
LOC_Os01g07330Os.34951.1.S1_at11/111+3453671..3461754expressed protein
LOC_Os01g07330Os.34951.2.S1_x_at4/111+3453671..3461754expressed protein
LOC_Os01g07340Os.34951.2.S1_at9/111+3462436..3464322expressed protein
LOC_Os01g07340Os.34951.2.S1_x_at6/111+3462436..3464322expressed protein
LOC_Os01g07350Os.23703.2.S1_x_at11/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07350Os.23703.2.S1_at11/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07350Os.23703.1.A1_at10/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1665.1.S1_a_at--15--7351Chr01:3442861..3442885 (25 bp)
GTGAACGGGTGGCAGGTCCTCTCGG
LOC_Os01g07300
Os.1665.1.S1_a_at--546--9511Chr01:3442880..3442904 (25 bp)
TCTCGGCGGCCATGCTCGGCACGGA
LOC_Os01g07300
Os.1665.1.S1_a_at--920--7891Chr01:3442922..3442946 (25 bp)
GGTTCGCGCCGCTGAGGGACATGGG
LOC_Os01g07300
Os.1665.1.S1_a_at--219--1091Chr01:3443026..3443050 (25 bp)
AGGGCGCTCCAGCTGTTCCACCATG
LOC_Os01g07300
Os.1665.1.S1_a_at--724--3811Chr01:3443032..3443056 (25 bp)
CTCCAGCTGTTCCACCATGGGAACT
LOC_Os01g07300
Os.1665.1.S1_a_at--866--791Chr01:3443048..3443072 (25 bp)
ATGGGAACTAGATTTTGATGCAGCT
LOC_Os01g07300
Os.1665.1.S1_a_at--342--10371Chr01:3443077..3443101 (25 bp)
TTTTTTCTCCTTGTTTGAGCCAATA
LOC_Os01g07300
Os.1665.1.S1_a_at--1064--10571Chr01:3443081..3443105 (25 bp)
TTCTCCTTGTTTGAGCCAATAAAAT
LOC_Os01g07300
Os.1665.1.S1_a_at--911--7871Chr01:3443120..3443144 (25 bp)
GGTTTTGCTATTTGATTTGAGTAGA
LOC_Os01g07300
Os.1665.1.S1_a_at--543--131Chr01:3443175..3443199 (25 bp)
ATTCAGCACCATAGTTTTATCTATA
LOC_Os01g07300
Os.1665.1.S1_a_at--75--5091Chr01:3443180..3443204 (25 bp)
GCACCATAGTTTTATCTATAGCTAT
LOC_Os01g07300
Target Sequence 
GTGAACGGGTGGCAGGTCCTCTCGGCGGCCATGCTCGGCACGGACGCGCGGCCGCCGGCGAGGTTCGCGCCGCTGAGGGA
CATGGGCGTGGACACGGTGGAGGAGGCGGCGGCGACGGTGGGGATCCTGCTGTTCGTCGAGGTCCCCGGCGGGATGACGG
CGGCGAGGGCGCTCCAGCTGTTCCACCATGGGAACTAGATTTTGATGCAGCTGGATTTTTTTCTCCTTGTTTGAGCCAAT
AAAATGTTAGATTTGTGATGGTTTTGCTATTTGATTTGAGTAGAAATGTTAGATTTTGTGTGTATTCGGAATAAATTCAG
CACCATAGTTTTATCTATAGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1665.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis