Browse Element(s) Details


Os.21563.1.S2_at

Description gb:AK121956.1
DB_XREF= gi:37991579
TID=Os.21563.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21563 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative AP2-domain DNA-binding protein (P0701D05.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107M13, full insert sequence.
FL= gb:AF300971.1 gb:AK067313.1 gb:AK121956.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0712011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07080Os.32557.1.S1_s_at11/111+3325340..3328765DEAD/DEAH box helicase, putative, expressed
LOC_Os01g07080Os.32557.1.S1_at9/111+3325340..3328765DEAD/DEAH box helicase, putative, expressed
LOC_Os01g07090Os.5408.1.S1_at11/111+3329754..3332837Senescence-associated protein, putative, expressed
LOC_Os01g07100Os.21141.1.S1_at4/111+3333210..3339688hypothetical protein
LOC_Os01g07110Os.51871.1.S1_at11/111+3342005..3351851BRCA2 repeat family protein, expressed
LOC_Os01g07120Os.21563.1.S1_a_at11/111+3353185..3358006AP2 domain containing protein, expressed
LOC_Os01g07120Os.21563.1.S2_at11/111+3353185..3358006AP2 domain containing protein, expressed
LOC_Os01g07130Os.32760.1.S1_at11/111+3355336..3357462expressed protein
LOC_Os01g07140Os.7217.1.S1_a_at11/111+3358811..3364460Kelch motif family protein, expressed
LOC_Os01g07150Os.8693.1.S1_x_at11/111+3373395..3374007expressed protein
LOC_Os01g07150Os.55406.1.S1_x_at1/111+3373395..3374007expressed protein
LOC_Os01g07160OsAffx.22760.2.S1_at11/111+3377529..3378860F-box domain containing protein
LOC_Os01g07160OsAffx.22760.2.S1_s_at11/111+3377529..3378860F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009414biological_processresponse to water deprivation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21563.1.S2_at--1030--1611Chr01:3357431..3357455 (25 bp)
AGCTGTGAGCCATTACGTTGTTGAA
LOC_Os01g07120
Os.21563.1.S2_at--448--10411Chr01:3357541..3357565 (25 bp)
TTTTGGCTCATCCATGACTGAGTCT
LOC_Os01g07120
Os.21563.1.S2_at--520--5731Chr01:3357556..3357580 (25 bp)
GACTGAGTCTAATGAAGCACGGCAT
LOC_Os01g07120
Os.21563.1.S2_at--951--1471Chr01:3357667..3357691 (25 bp)
AGAATCTTCATTTGTGCTTTGCACA
LOC_Os01g07120
Os.21563.1.S2_at--866--6231Chr01:3357841..3357865 (25 bp)
GATGGATTCTGGATAACTCGGTTCA
LOC_Os01g07120
Os.21563.1.S2_at--878--7551Chr01:3357870..3357894 (25 bp)
GGGCCTAACGACACCAAATTTGTGA
LOC_Os01g07120
Os.21563.1.S2_at--121--6791Chr01:3357902..3357926 (25 bp)
GTTAGCTTGTGTGTCGACTGGGAAT
LOC_Os01g07120
Os.21563.1.S2_at--1122--8631Chr01:3357920..3357944 (25 bp)
TGGGAATTGGAACCTGATGCATCTC
LOC_Os01g07120
Os.21563.1.S2_at--397--6331Chr01:3357935..3357959 (25 bp)
GATGCATCTCACTCTTTGCTTCCGT
LOC_Os01g07120
Os.21563.1.S2_at--719--10651Chr01:3357954..3357978 (25 bp)
TTCCGTTCCGTCAAGCTTCAAGATT
LOC_Os01g07120
Os.21563.1.S2_at--779--6531Chr01:3357975..3357999 (25 bp)
GATTTACCTCTCAATCGAGTATTGC
LOC_Os01g07120
Target Sequence 
AGCTGTGAGCCATTACGTTGTTGAAAACTTGAGCTTGTTTTGCAATGTGGGAGTATCCCAGTATTGGTGTGGTTTTATAG
ATGGAAGAGATGATGGTTCCTCAGATAAAATTTTGGCTCATCCATGACTGAGTCTAATGAAGCACGGCATAATTTTTGGT
AAAGCGGATTCTTGGTTGTTAGAAGAGGAAATCAAGTCATTGAGCTGAGGAATCTTTGTTGTTAATTGGAGTTTGAAGAA
TCTTCATTTGTGCTTTGCACAGGTGCTAAAGCCAAAAGTTAACTGCTATACGGTAATATGATATATCAAACCCAAGTTGG
TTGGCTAATGTTGTAGTGAAGAGAATATAACGTGGCTCTAAACAGGAAAGCTGGAAAGAACGATATGGTTGGGTGGAATG
GATTAGTTTGGATGGATTCTGGATAACTCGGTTCAATAAGGGCCTAACGACACCAAATTTGTGACTTGAAGGTTAGCTTG
TGTGTCGACTGGGAATTGGAACCTGATGCATCTCACTCTTTGCTTCCGTTCCGTCAAGCTTCAAGATTTACCTCTCAATC
GAGTATTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21563.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis