Browse Element(s) Details


Os.5408.1.S1_at

Description gb:AK099645.1
DB_XREF= gi:32984854
TID=Os.5408.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5408 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1189A09.35 (B1189A09.35), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013064A15, full insert sequence.
FL= gb:AK099645.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0709011/11Senescence-associated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07030OsAffx.10948.1.S1_at11/111+3309264..3310075Pollen proteins Ole e I family protein, expressed
LOC_Os01g07030OsAffx.23143.1.S1_x_at1/111+3309264..3310075Pollen proteins Ole e I family protein, expressed
LOC_Os01g07040Os.46013.1.S1_at8/111+3311804..3312411Pollen proteins Ole e I family protein, expressed
LOC_Os01g07040OsAffx.23143.1.S1_x_at1/111+3311804..3312411Pollen proteins Ole e I family protein, expressed
LOC_Os01g07050OsAffx.23143.1.S1_x_at1/111+3314356..3314913Pollen proteins Ole e I family protein, expressed
LOC_Os01g07060OsAffx.10949.1.S1_x_at11/111+3317253..3317837Pollen proteins Ole e I family protein
LOC_Os01g07070Os.45300.1.A1_at11/111+3319592..3325053transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g07070Os.8829.1.S1_at11/111+3319592..3325053transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g07080Os.32557.1.S1_s_at11/111+3325340..3328765DEAD/DEAH box helicase, putative, expressed
LOC_Os01g07080Os.32557.1.S1_at9/111+3325340..3328765DEAD/DEAH box helicase, putative, expressed
LOC_Os01g07090Os.5408.1.S1_at11/111+3329754..3332837Senescence-associated protein, putative, expressed
LOC_Os01g07100Os.21141.1.S1_at4/111+3333210..3339688hypothetical protein
LOC_Os01g07110Os.51871.1.S1_at11/111+3342005..3351851BRCA2 repeat family protein, expressed
LOC_Os01g07120Os.21563.1.S1_a_at11/111+3353185..3358006AP2 domain containing protein, expressed
LOC_Os01g07120Os.21563.1.S2_at11/111+3353185..3358006AP2 domain containing protein, expressed
LOC_Os01g07130Os.32760.1.S1_at11/111+3355336..3357462expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5408.1.S1_at--1011--8551Chr01:3330540..3330564 (25 bp)
TGGATGTCACCTTTGATTCACCCTA
LOC_Os01g07090
Os.5408.1.S1_at--946--6551Chr01:3330526..3330550 (25 bp)
GATTCACCCTACTCAATGGAGGCTC
LOC_Os01g07090
Os.5408.1.S1_at--1147--10391Chr01:3330394..3330418 (25 bp)
TTTTGATGTCCCCTCGTGGAAAAAG
LOC_Os01g07090
Os.5408.1.S1_at--1096--5671Chr01:3330245..3330269 (25 bp)
GACATTACGGTTATTGTTGCACAGG
LOC_Os01g07090
Os.5408.1.S1_at--693--2931Chr01:3330074..3330098 (25 bp)
AAGGCAGTGCTGTTGCCGTTGCATC
LOC_Os01g07090
Os.5408.1.S1_at--548--8811Chr01:3329976..3330000 (25 bp)
TGATTCTTCAAAGCGACGTTCTTCG
LOC_Os01g07090
Os.5408.1.S1_at--164--9171Chr01:3329951..3329975 (25 bp)
TGCGCCGCCATTTTCTATTTTATGT
LOC_Os01g07090
Os.5408.1.S1_at--536--10211Chr01:3329936..3329960 (25 bp)
TATTTTATGTCTTCCTCCTTATCTT
LOC_Os01g07090
Os.5408.1.S1_at--21--3091Chr01:3329856..3329880 (25 bp)
AATACTCATGTACAGCCGAATTCCC
LOC_Os01g07090
Os.5408.1.S1_at--396--10651Chr01:3329836..3329860 (25 bp)
TTCCCTGCAGAATTGAGTCGCTACG
LOC_Os01g07090
Os.5408.1.S1_at--341--1131Chr01:3329821..3329845 (25 bp)
AGTCGCTACGAATACACCTCTCTTT
LOC_Os01g07090
Target Sequence 
TGGATGTCACCTTTGATTCACCCTACTCAATGGAGGCTCGGAGTCGGGGTTTTGATGTCCCCTCGTGGAAAAAGTTCATT
GGAGGGAAACTAATAGGTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGA
TGAGGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCGTTGCATCCTCTGAACAGAAGGAAG
ACTCAATTACCACATAAACAGTAAAATCAATGATACCGCAATCACAATGTAACTACTGATTCTTCAAAGCGACGTTCTTC
GTGCGCCGCCATTTTCTATTTTATGTCTTCCTCCTTATCTTTTCTCTAAGGATGTACATTTGTAAGTTTCTACTGGAGGG
AATACAACTCAATCAAAATACTCATGTACAGCCGAATTCCCTGCAGAATTGAGTCGCTACGAATACACCTCTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5408.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis