Browse Element(s) Details


Os.32557.1.S1_s_at

Description gb:AK068747.1
DB_XREF= gi:32978770
TID=Os.32557.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.32557 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative RNA helicase (B1189A09.34), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013162N07, full insert sequence.
FL= gb:AK068747.1 gb:AK103737.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0708011/11DEAD/DEAH box helicase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07010OsAffx.23143.1.S1_x_at11/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07010OsAffx.23143.4.S1_s_at2/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07010OsAffx.23143.3.S1_x_at1/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.1.S1_x_at6/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.3.S1_x_at2/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.4.S1_s_at2/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07030OsAffx.10948.1.S1_at11/111+3309264..3310075Pollen proteins Ole e I family protein, expressed
LOC_Os01g07030OsAffx.23143.1.S1_x_at1/111+3309264..3310075Pollen proteins Ole e I family protein, expressed
LOC_Os01g07040Os.46013.1.S1_at8/111+3311804..3312411Pollen proteins Ole e I family protein, expressed
LOC_Os01g07040OsAffx.23143.1.S1_x_at1/111+3311804..3312411Pollen proteins Ole e I family protein, expressed
LOC_Os01g07050OsAffx.23143.1.S1_x_at1/111+3314356..3314913Pollen proteins Ole e I family protein, expressed
LOC_Os01g07060OsAffx.10949.1.S1_x_at11/111+3317253..3317837Pollen proteins Ole e I family protein
LOC_Os01g07070Os.45300.1.A1_at11/111+3319592..3325053transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g07070Os.8829.1.S1_at11/111+3319592..3325053transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g07080Os.32557.1.S1_s_at11/111+3325340..3328765DEAD/DEAH box helicase, putative, expressed
LOC_Os01g07080Os.32557.1.S1_at9/111+3325340..3328765DEAD/DEAH box helicase, putative, expressed
LOC_Os01g07090Os.5408.1.S1_at11/111+3329754..3332837Senescence-associated protein, putative, expressed
LOC_Os01g07100Os.21141.1.S1_at4/111+3333210..3339688hypothetical protein
LOC_Os01g07110Os.51871.1.S1_at11/111+3342005..3351851BRCA2 repeat family protein, expressed
LOC_Os01g07120Os.21563.1.S1_a_at11/111+3353185..3358006AP2 domain containing protein, expressed
LOC_Os01g07120Os.21563.1.S2_at11/111+3353185..3358006AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32557.1.S1_s_at--257--5551Chr01:3325835..3325859 (25 bp)
GAAAGCCCCGGAGAAGCCTGAAAAG
LOC_Os01g07080
Os.32557.1.S1_s_at--350--5411Chr01:3325823..3325847 (25 bp)
GAAGCCTGAAAAGCCAAAGCGGAAG
LOC_Os01g07080
Os.32557.1.S1_s_at--758--7831Chr01:3325792..3325816 (25 bp)
GGTAAACAGCGTCAAGCAGTCCAAA
LOC_Os01g07080
Os.32557.1.S1_s_at--194--3391Chr01:3325786..3325810 (25 bp)
CAGCGTCAAGCAGTCCAAACCAAGG
LOC_Os01g07080
Os.32557.1.S1_s_at--608--7251Chr01:3325774..3325798 (25 bp)
GTCCAAACCAAGGAGGACATGGATG
LOC_Os01g07080
Os.32557.1.S1_s_at--245--5291Chr01:3325565..3325589 (25 bp)
GAAGGCAAAAGGGTCTAGGAGATTT
LOC_Os01g07080
Os.32557.1.S1_s_at--1088--931Chr01:3325534..3325558 (25 bp)
AGGAGCAAACAGAAGACTAGGAGAA
LOC_Os01g07080
Os.32557.1.S1_s_at--808--10311Chr01:3325468..3325492 (25 bp)
TTTCTTTAACCAGTGTAGGTTGCAA
LOC_Os01g07080
Os.32557.1.S1_s_at--1117--10271Chr01:3325441..3325465 (25 bp)
TTTGCCCTGGCTATTGTATGTTCGA
LOC_Os01g07080
Os.32557.1.S1_s_at--912--4531Chr01:3325438..3325462 (25 bp)
GCCCTGGCTATTGTATGTTCGATTT
LOC_Os01g07080
Os.32557.1.S1_s_at--933--4871Chr01:3325432..3325456 (25 bp)
GCTATTGTATGTTCGATTTTGTGAT
LOC_Os01g07080
Target Sequence 
GAAAGCCCCGGAGAAGCCTGAAAAGCCAAAGCGGAAGAAGACAGGTAAACAGCGTCAAGCAGTCCAAACCAAGGAGGACA
TGGATGAGCTCGCGAATGAGTACCGGCTCCTGAAGAAGCTGAAGCGGGGGGTGATCGACGAGGACGAGTACGAGAAGCTC
ACCGGATTCGGGGAATCTGACGATGACGATTCCTCGGATGGCGGCGATTCTGACCTGGACGAGAGAAAGGAGAGGGGCAA
CAAGGTGCTCAAGAAAATCAAGCAGAAAGGGAAGGCAAAAGGGTCTAGGAGATTTGAAGGGAGGAGCAAACAGAAGACTA
GGAGAAGATGAAAAGTATATCTTGTTCTTAGCAATTTTGCTTTTTTTTTTCTTTAACCAGTGTAGGTTGCAAGTTTTGCC
CTGGCTATTGTATGTTCGATTTTGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32557.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis