Browse Element(s) Details


OsAffx.10948.1.S1_at

Description tigr:9629.m00632
TID=OsAffx.10948.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Pollen proteins Ole e I family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0703011/11Pollen proteins Ole e I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06940OsAffx.23143.5.S1_x_at6/111+3285125..3285692pollen Ole e 1 allergen and extensin family protein, putative, expressed
LOC_Os01g06940OsAffx.23143.5.S1_at4/111+3285125..3285692pollen Ole e 1 allergen and extensin family protein, putative, expressed
LOC_Os01g06940OsAffx.23143.3.S1_x_at1/111+3285125..3285692pollen Ole e 1 allergen and extensin family protein, putative, expressed
LOC_Os01g06950NANA1+3286535..3286999hypothetical protein
LOC_Os01g06960OsAffx.23143.1.S1_x_at9/111+3287563..3288343Pollen proteins Ole e I family protein
LOC_Os01g06960OsAffx.23143.4.S1_s_at2/111+3287563..3288343Pollen proteins Ole e I family protein
LOC_Os01g06960OsAffx.23143.3.S1_x_at1/111+3287563..3288343Pollen proteins Ole e I family protein
LOC_Os01g06970NANA1+3289787..3290291hypothetical protein
LOC_Os01g06980OsAffx.23143.3.S1_x_at11/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980OsAffx.23143.3.S1_at11/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980OsAffx.23143.1.S1_x_at3/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980OsAffx.23143.4.S1_s_at1/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06990OsAffx.23143.4.S1_s_at2/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g06990OsAffx.23143.3.S1_x_at2/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g06990OsAffx.23143.1.S1_x_at1/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g07000OsAffx.23143.4.S1_s_at11/111+3297244..3297812pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g07000OsAffx.23143.1.S1_x_at2/111+3297244..3297812pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g07010OsAffx.23143.1.S1_x_at11/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07010OsAffx.23143.4.S1_s_at2/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07010OsAffx.23143.3.S1_x_at1/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.1.S1_x_at6/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.3.S1_x_at2/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.4.S1_s_at2/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07030OsAffx.10948.1.S1_at11/111+3309264..3310075Pollen proteins Ole e I family protein, expressed
LOC_Os01g07030OsAffx.23143.1.S1_x_at1/111+3309264..3310075Pollen proteins Ole e I family protein, expressed
LOC_Os01g07040Os.46013.1.S1_at8/111+3311804..3312411Pollen proteins Ole e I family protein, expressed
LOC_Os01g07040OsAffx.23143.1.S1_x_at1/111+3311804..3312411Pollen proteins Ole e I family protein, expressed
LOC_Os01g07050OsAffx.23143.1.S1_x_at1/111+3314356..3314913Pollen proteins Ole e I family protein, expressed
LOC_Os01g07060OsAffx.10949.1.S1_x_at11/111+3317253..3317837Pollen proteins Ole e I family protein
LOC_Os01g07070Os.45300.1.A1_at11/111+3319592..3325053transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g07070Os.8829.1.S1_at11/111+3319592..3325053transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g07080Os.32557.1.S1_s_at11/111+3325340..3328765DEAD/DEAH box helicase, putative, expressed
LOC_Os01g07080Os.32557.1.S1_at9/111+3325340..3328765DEAD/DEAH box helicase, putative, expressed
LOC_Os01g07090Os.5408.1.S1_at11/111+3329754..3332837Senescence-associated protein, putative, expressed
LOC_Os01g07100Os.21141.1.S1_at4/111+3333210..3339688hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10948.1.S1_at--545--9791Chr01:3309538..3309562 (25 bp)
TAAGCGATGGACTGGTCAGGGCTAC
LOC_Os01g07030
OsAffx.10948.1.S1_at--561--1851Chr01:3309515..3309539 (25 bp)
ACGATAACGTTGTTTATGCCGCCGG
LOC_Os01g07030
OsAffx.10948.1.S1_at--1031--2651Chr01:3309456..3309480 (25 bp)
AAGCACTAAAACTAGGCACCCCATG
LOC_Os01g07030
OsAffx.10948.1.S1_at--387--2031Chr01:3309446..3309470 (25 bp)
ACTAGGCACCCCATGTAAATGTGGT
LOC_Os01g07030
OsAffx.10948.1.S1_at--766--8611Chr01:3309425..3309449 (25 bp)
TGGTGTCTATATTTGCGACGTTTAC
LOC_Os01g07030
OsAffx.10948.1.S1_at--174--211Chr01:3309415..3309439 (25 bp)
ATTTGCGACGTTTACATGCGCGTGC
LOC_Os01g07030
OsAffx.10948.1.S1_at--745--6811Chr01:3309406..3309430 (25 bp)
GTTTACATGCGCGTGCTTTTCATAA
LOC_Os01g07030
OsAffx.10948.1.S1_at--156--3531Chr01:3309401..3309425 (25 bp)
CATGCGCGTGCTTTTCATAAATTTG
LOC_Os01g07030
OsAffx.10948.1.S1_at--554--7431Chr01:3309332..3309356 (25 bp)
GTGTTTCTATCTTAATTATTGGTGC
LOC_Os01g07030
OsAffx.10948.1.S1_at--748--3131Chr01:3309319..3309343 (25 bp)
AATTATTGGTGCTCTTGTGTGACAT
LOC_Os01g07030
OsAffx.10948.1.S1_at--1043--7311Chr01:3309311..3309335 (25 bp)
GTGCTCTTGTGTGACATTTGTTGTA
LOC_Os01g07030
Target Sequence 
TAAGCGATGGACTGGTCAGGGCTACGATAACGTTGTTTATGCCGCCGGTCCTCTCGCCTTCCGGCCGGCGATATGCCCTC
CCAAGCACTAAAACTAGGCACCCCATGTAAATGTGGTGTCTATATTTGCGACGTTTACATGCGCGTGCTTTTCATAAATT
TGGGATGTGTGGAATTCAATTTGGATGGTGGATATGTATTTCTTTTGTGTTTCTATCTTAATTATTGGTGCTCTTGTGTG
ACATTTGTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis