Browse Element(s) Details


Os.21141.1.S1_at

Description gb:AK066699.1
DB_XREF= gi:32976717
TID=Os.21141.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21141 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013073F20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073F20, full insert sequence.
FL= gb:AK066699.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g071004/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07030OsAffx.10948.1.S1_at11/111+3309264..3310075Pollen proteins Ole e I family protein, expressed
LOC_Os01g07030OsAffx.23143.1.S1_x_at1/111+3309264..3310075Pollen proteins Ole e I family protein, expressed
LOC_Os01g07040Os.46013.1.S1_at8/111+3311804..3312411Pollen proteins Ole e I family protein, expressed
LOC_Os01g07040OsAffx.23143.1.S1_x_at1/111+3311804..3312411Pollen proteins Ole e I family protein, expressed
LOC_Os01g07050OsAffx.23143.1.S1_x_at1/111+3314356..3314913Pollen proteins Ole e I family protein, expressed
LOC_Os01g07060OsAffx.10949.1.S1_x_at11/111+3317253..3317837Pollen proteins Ole e I family protein
LOC_Os01g07070Os.45300.1.A1_at11/111+3319592..3325053transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g07070Os.8829.1.S1_at11/111+3319592..3325053transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g07080Os.32557.1.S1_s_at11/111+3325340..3328765DEAD/DEAH box helicase, putative, expressed
LOC_Os01g07080Os.32557.1.S1_at9/111+3325340..3328765DEAD/DEAH box helicase, putative, expressed
LOC_Os01g07090Os.5408.1.S1_at11/111+3329754..3332837Senescence-associated protein, putative, expressed
LOC_Os01g07100Os.21141.1.S1_at4/111+3333210..3339688hypothetical protein
LOC_Os01g07110Os.51871.1.S1_at11/111+3342005..3351851BRCA2 repeat family protein, expressed
LOC_Os01g07120Os.21563.1.S1_a_at11/111+3353185..3358006AP2 domain containing protein, expressed
LOC_Os01g07120Os.21563.1.S2_at11/111+3353185..3358006AP2 domain containing protein, expressed
LOC_Os01g07130Os.32760.1.S1_at11/111+3355336..3357462expressed protein
LOC_Os01g07140Os.7217.1.S1_a_at11/111+3358811..3364460Kelch motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21141.1.S1_at--416--2271Chr01:3337686..3337710 (25 bp)
AAATCTGCTGACTTGGAAATCCCCA
LOC_Os01g07100
Os.21141.1.S1_at--413--3151Chr01:3337721..3337745 (25 bp)
AATTCAGTTCATCAAGTATCTCTTA
LOC_Os01g07100
Os.21141.1.S1_at--908--6891NONE
GTATCTCTTACCGACGCTCGAAAGA
NONE
Os.21141.1.S1_at--993--4791Chr01:3338552..3338576 (25 bp)
GCTCGAAAGAGATGCTTACCCTCTT
LOC_Os01g07100
Os.21141.1.S1_at--827--3071Chr01:3339098..3339122 (25 bp)
AATACGGAGCCAGAGCGCTTTGGAA
LOC_Os01g07100
Os.21141.1.S1_at--913--7931Chr01:3339700..3339724 (25 bp)
GGATTTCGTCATAAATATTCCAGCA
NONE
Os.21141.1.S1_at--70--4211Chr01:3339733..3339757 (25 bp)
CCGACGCGCATTTCGTTCGCTAATA
NONE
Os.21141.1.S1_at--148--8411Chr01:3339785..3339809 (25 bp)
GGCCCGGCCCGAAAAGAGCATAAGA
NONE
Os.21141.1.S1_at--321--9671Chr01:3339832..3339856 (25 bp)
TCAGCCTTGATTATCCTGAGGCCAT
NONE
Os.21141.1.S1_at--953--871Chr01:3339850..3339874 (25 bp)
AGGCCATACATTTAGCTCCAAACTG
NONE
Os.21141.1.S1_at--648--10451Chr01:3339861..3339885 (25 bp)
TTAGCTCCAAACTGCATATGATGAT
NONE
Target Sequence 
AAATCTGCTGACTTGGAAATCCCCAAAACAGATTTAATTCAGTTCATCAAGTATCTCTTACCGACGCTCGAAAGAGATGC
TTACCCTCTTNTTCAGGACANTGCGNCAGANGTACNAGNCNANTACAGATCNCGACCCTGTATTTGAGGAGTTATTAGAT
GAAATAGCCGCAAAATTTTATGGAATACGGAGCCAGAGCGCTTTGGAAGGACTTTTTGGTGATATGTTCAGGGTATAATG
ATGAGAAAAGGATTTCGTCATAAATATTCCAGCACNAAAGCTCCCGACGCGCATTTCGTTCGCTAATANAAATTGCTGCT
GGAAGATGAACACCCGGCCCGGCCCGAAAAGAGCATAAGAAAAAGTTCTGTNTGCTNGCCTTCCTCAGCCTTGATTATCC
TGAGGCCATACATTTAGCTCCAAACTGCATATGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis