Browse Element(s) Details


Os.51871.1.S1_at

Description gb:AK064137.1
DB_XREF= gi:32974155
TID=Os.51871.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51871 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-G12, full insert sequence.
FL= gb:AK064137.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0711011/11BRCA2 repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07060OsAffx.10949.1.S1_x_at11/111+3317253..3317837Pollen proteins Ole e I family protein
LOC_Os01g07070Os.45300.1.A1_at11/111+3319592..3325053transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g07070Os.8829.1.S1_at11/111+3319592..3325053transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g07080Os.32557.1.S1_s_at11/111+3325340..3328765DEAD/DEAH box helicase, putative, expressed
LOC_Os01g07080Os.32557.1.S1_at9/111+3325340..3328765DEAD/DEAH box helicase, putative, expressed
LOC_Os01g07090Os.5408.1.S1_at11/111+3329754..3332837Senescence-associated protein, putative, expressed
LOC_Os01g07100Os.21141.1.S1_at4/111+3333210..3339688hypothetical protein
LOC_Os01g07110Os.51871.1.S1_at11/111+3342005..3351851BRCA2 repeat family protein, expressed
LOC_Os01g07120Os.21563.1.S1_a_at11/111+3353185..3358006AP2 domain containing protein, expressed
LOC_Os01g07120Os.21563.1.S2_at11/111+3353185..3358006AP2 domain containing protein, expressed
LOC_Os01g07130Os.32760.1.S1_at11/111+3355336..3357462expressed protein
LOC_Os01g07140Os.7217.1.S1_a_at11/111+3358811..3364460Kelch motif family protein, expressed
LOC_Os01g07150Os.8693.1.S1_x_at11/111+3373395..3374007expressed protein
LOC_Os01g07150Os.55406.1.S1_x_at1/111+3373395..3374007expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51871.1.S1_at--446--2171Chr01:3349744..3349768 (25 bp)
ACACGGAAGATTTTGGTAGGCCTGA
LOC_Os01g07110
Os.51871.1.S1_at--399--6931Chr01:3349729..3349753 (25 bp)
GTAGGCCTGACCAATCTCTGATTTT
LOC_Os01g07110
Os.51871.1.S1_at--387--3191Chr01:3349718..3349742 (25 bp)
CAATCTCTGATTTTCCAAACTGGTT
LOC_Os01g07110
Os.51871.1.S1_at--529--6531Chr01:3349710..3349734 (25 bp)
GATTTTCCAAACTGGTTCGCGAAGA
LOC_Os01g07110
Os.51871.1.S1_at--515--7891Chr01:3349697..3349721 (25 bp)
GGTTCGCGAAGACCAGTCTTGATCA
LOC_Os01g07110
Os.51871.1.S1_at--385--5371Chr01:3349690..3349714 (25 bp)
GAAGACCAGTCTTGATCAGTGAAAG
LOC_Os01g07110
Os.51871.1.S1_at--280--7371Chr01:3349672..3349696 (25 bp)
GTGAAAGATCTAGCTCTGTGGTGAA
LOC_Os01g07110
Os.51871.1.S1_at--278--8031Chr01:3349554..3349667 (25 bp)
GGAGGTGCTGAAAATATTGTGTTCC
LOC_Os01g07110
Os.51871.1.S1_at--385--891Chr01:3349515..3349539 (25 bp)
AGGCCTGTTGTGGTGAGCCAGACCT
LOC_Os01g07110
Os.51871.1.S1_at--1040--7491Chr01:3349506..3349530 (25 bp)
GTGGTGAGCCAGACCTCAATTCAAA
LOC_Os01g07110
Os.51871.1.S1_at--441--3451Chr01:3349472..3349496 (25 bp)
CAGTATTAGATCAAGAATGTGCCAA
LOC_Os01g07110
Target Sequence 
ACACGGAAGATTTTGGTAGGCCTGACCAATCTCTGATTTTCCAAACTGGTTCGCGAAGACCAGTCTTGATCAGTGAAAGA
TCTAGCTCTGTGGTGAAGGATGGAGGTGCTGAAAATATTGTGTTCCAAACGGGGTTAGGGAGGCCTGTTGTGGTGAGCCA
GACCTCAATTCAAAAGGCAAGGACAGTATTAGATCAAGAATGTGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51871.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis