Browse Element(s) Details


Os.32760.1.S1_at

Description gb:AK103011.1
DB_XREF= gi:32988220
TID=Os.32760.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32760 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0701D05.8 (P0701D05.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033116J22, full insert sequence.
FL= gb:AK059335.1 gb:AK103011.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0713011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07090Os.5408.1.S1_at11/111+3329754..3332837Senescence-associated protein, putative, expressed
LOC_Os01g07100Os.21141.1.S1_at4/111+3333210..3339688hypothetical protein
LOC_Os01g07110Os.51871.1.S1_at11/111+3342005..3351851BRCA2 repeat family protein, expressed
LOC_Os01g07120Os.21563.1.S1_a_at11/111+3353185..3358006AP2 domain containing protein, expressed
LOC_Os01g07120Os.21563.1.S2_at11/111+3353185..3358006AP2 domain containing protein, expressed
LOC_Os01g07130Os.32760.1.S1_at11/111+3355336..3357462expressed protein
LOC_Os01g07140Os.7217.1.S1_a_at11/111+3358811..3364460Kelch motif family protein, expressed
LOC_Os01g07150Os.8693.1.S1_x_at11/111+3373395..3374007expressed protein
LOC_Os01g07150Os.55406.1.S1_x_at1/111+3373395..3374007expressed protein
LOC_Os01g07160OsAffx.22760.2.S1_at11/111+3377529..3378860F-box domain containing protein
LOC_Os01g07160OsAffx.22760.2.S1_s_at11/111+3377529..3378860F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32760.1.S1_at--685--2931Chr01:3355887..3355911 (25 bp)
AAGGCATCGGTCAGCGAAAGCCTCA
LOC_Os01g07130
Os.32760.1.S1_at--901--5551Chr01:3355872..3355896 (25 bp)
GAAAGCCTCACACTGACCATGAAAC
LOC_Os01g07130
Os.32760.1.S1_at--159--5471Chr01:3355804..3355828 (25 bp)
GAACTGGTTTCTCCATGATGGTGTA
LOC_Os01g07130
Os.32760.1.S1_at--320--6151Chr01:3355770..3355794 (25 bp)
GAGGTTTATTCTTCAAAGCCTTCCA
LOC_Os01g07130
Os.32760.1.S1_at--833--8951Chr01:3355711..3355735 (25 bp)
TGACAGGTACTCGACCGTGTATCGC
LOC_Os01g07130
Os.32760.1.S1_at--871--7431Chr01:3355695..3355719 (25 bp)
GTGTATCGCCCATTCACGAAGAAGG
LOC_Os01g07130
Os.32760.1.S1_at--817--7491Chr01:3355670..3355694 (25 bp)
GTGGTGTCATTTTCGCACGTGATGA
LOC_Os01g07130
Os.32760.1.S1_at--213--6211Chr01:3355577..3355601 (25 bp)
GAGGCTGGATTTGGCTGACCTACTG
LOC_Os01g07130
Os.32760.1.S1_at--612--10871Chr01:3355567..3355591 (25 bp)
TTGGCTGACCTACTGGCCTAACAAA
LOC_Os01g07130
Os.32760.1.S1_at--23--1351Chr01:3355503..3355527 (25 bp)
AGAGAATGTCTGCAACTTCCCCTTA
LOC_Os01g07130
Os.32760.1.S1_at--215--2051Chr01:3355489..3355513 (25 bp)
ACTTCCCCTTATGAAATCTCCATGA
LOC_Os01g07130
Target Sequence 
AAGGCATCGGTCAGCGAAAGCCTCACACTGACCATGAAACCCTGGAAATTTGAACAGTCTGTGCATGGAAACACTACAAC
CTTGAACTGGTTTCTCCATGATGGTGTAAACGGAAGGGAGGTTTATTCTTCAAAGCCTTCCAAGCTCTCCCTGCTTCAGC
CACGGGCCTGGTTNCGTGACAGGTACTCGACCGTGTATCGCCCATTCACGAAGAAGGGTGGTGTCATTTTCGCACGTGAT
GAATATGGAGACAGCGTCTGGTGGAAGATCTGTGGTGCAGCATTAGGGAAGACCATGGACTGGGAGATTAGAGGCTGGAT
TTGGCTGACCTACTGGCCTAACAAACAGAAGACCTTTCACAGTGAAACAAGGAGGCTTGAATTCAGAGAATGTCTGCAAC
TTCCCCTTATGAAATCTCCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis