Browse Element(s) Details


OsAffx.23143.1.S1_x_at

Description tigr:9629.m00630
TID=OsAffx.23143.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Pollen proteins Ole e I family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0701011/11Pollen proteins Ole e I family protein
LOC_Os01g069609/11Pollen proteins Ole e I family protein
LOC_Os01g070206/11Pollen proteins Ole e I family protein
LOC_Os01g069803/11pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g070002/11pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g070401/11Pollen proteins Ole e I family protein, expressed
LOC_Os01g070501/11Pollen proteins Ole e I family protein, expressed
LOC_Os01g069901/11Pollen proteins Ole e I family protein
LOC_Os01g070301/11Pollen proteins Ole e I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06920Os.18302.1.S1_at11/111+3279997..3283159Leucine Rich Repeat family protein, expressed
LOC_Os01g06940OsAffx.23143.5.S1_x_at6/111+3285125..3285692pollen Ole e 1 allergen and extensin family protein, putative, expressed
LOC_Os01g06940OsAffx.23143.5.S1_at4/111+3285125..3285692pollen Ole e 1 allergen and extensin family protein, putative, expressed
LOC_Os01g06940OsAffx.23143.3.S1_x_at1/111+3285125..3285692pollen Ole e 1 allergen and extensin family protein, putative, expressed
LOC_Os01g06950NANA1+3286535..3286999hypothetical protein
LOC_Os01g06960OsAffx.23143.1.S1_x_at9/111+3287563..3288343Pollen proteins Ole e I family protein
LOC_Os01g06960OsAffx.23143.4.S1_s_at2/111+3287563..3288343Pollen proteins Ole e I family protein
LOC_Os01g06960OsAffx.23143.3.S1_x_at1/111+3287563..3288343Pollen proteins Ole e I family protein
LOC_Os01g06970NANA1+3289787..3290291hypothetical protein
LOC_Os01g06980OsAffx.23143.3.S1_x_at11/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980OsAffx.23143.3.S1_at11/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980OsAffx.23143.1.S1_x_at3/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980OsAffx.23143.4.S1_s_at1/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06990OsAffx.23143.4.S1_s_at2/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g06990OsAffx.23143.3.S1_x_at2/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g06990OsAffx.23143.1.S1_x_at1/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g07000OsAffx.23143.4.S1_s_at11/111+3297244..3297812pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g07000OsAffx.23143.1.S1_x_at2/111+3297244..3297812pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g07010OsAffx.23143.1.S1_x_at11/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07010OsAffx.23143.4.S1_s_at2/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07010OsAffx.23143.3.S1_x_at1/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.1.S1_x_at6/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.3.S1_x_at2/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.4.S1_s_at2/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07030OsAffx.10948.1.S1_at11/111+3309264..3310075Pollen proteins Ole e I family protein, expressed
LOC_Os01g07030OsAffx.23143.1.S1_x_at1/111+3309264..3310075Pollen proteins Ole e I family protein, expressed
LOC_Os01g07040Os.46013.1.S1_at8/111+3311804..3312411Pollen proteins Ole e I family protein, expressed
LOC_Os01g07040OsAffx.23143.1.S1_x_at1/111+3311804..3312411Pollen proteins Ole e I family protein, expressed
LOC_Os01g07050OsAffx.23143.1.S1_x_at1/111+3314356..3314913Pollen proteins Ole e I family protein, expressed
LOC_Os01g07060OsAffx.10949.1.S1_x_at11/111+3317253..3317837Pollen proteins Ole e I family protein
LOC_Os01g07070Os.45300.1.A1_at11/111+3319592..3325053transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g07070Os.8829.1.S1_at11/111+3319592..3325053transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g07080Os.32557.1.S1_s_at11/111+3325340..3328765DEAD/DEAH box helicase, putative, expressed
LOC_Os01g07080Os.32557.1.S1_at9/111+3325340..3328765DEAD/DEAH box helicase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23143.1.S1_x_at--1030--4175Chr01:3300740..3300764 (25 bp)
CCCACAGCGACAAGCTGCTGGTGAA
LOC_Os01g07010
OsAffx.23143.1.S1_x_at--950--7437Chr01:3303498..3303522 (25 bp)
GTGTACTGCCAGAGCTGCGCGCAAA
LOC_Os01g07020
OsAffx.23143.1.S1_x_at--50--5914Chr01:3303487..3303511 (25 bp)
GAGCTGCGCGCAAAGGAACACACAC
LOC_Os01g07020
OsAffx.23143.1.S1_x_at--870--5133Chr01:3303478..3303502 (25 bp)
GCAAAGGAACACACACAGCCTCGAA
LOC_Os01g07020
OsAffx.23143.1.S1_x_at--104--953Chr01:3303474..3303498 (25 bp)
AGGAACACACACAGCCTCGAAGGCG
LOC_Os01g07020
OsAffx.23143.1.S1_x_at--659--2194Chr01:3303470..3303494 (25 bp)
ACACACACAGCCTCGAAGGCGCGAA
LOC_Os01g07020
OsAffx.23143.1.S1_x_at--450--3353Chr01:3300500..3300524 (25 bp)
CACGCAAGGCGTGCTATGTGCGGCT
LOC_Os01g07010
OsAffx.23143.1.S1_x_at--92--3572Chr01:3300436..3300460 (25 bp)
CATCAACTACTCTAGCATCGAGGGT
LOC_Os01g07010
OsAffx.23143.1.S1_x_at--60--2512Chr01:3300432..3300456 (25 bp)
AACTACTCTAGCATCGAGGGTGCGC
LOC_Os01g07010
OsAffx.23143.1.S1_x_at--211--9911Chr01:3300429..3300453 (25 bp)
TACTCTAGCATCGAGGGTGCGCCGC
LOC_Os01g07010
OsAffx.23143.1.S1_x_at--919--10011Chr01:3300424..3300448 (25 bp)
TAGCATCGAGGGTGCGCCGCTCCGT
LOC_Os01g07010
Target Sequence 
CCCACAGCGACAAGCTGCTGGTGAAGGTGGAGGGTATGGTGTACTGCCAGAGCTGCGCGCAAAGGAACACACACAGCCTC
GAAGGCGCGAAGCCGCTGCCTAAGGCGGANGTGTCTNTCATCTGCCACGACGCCAAGAATCGNGCCATGGTGAGGTGTCG
TCAGGCCGTCNCCNACGATAACGGCTACTTCCNTGCGGAGCTCGATGAGACCAAAGTCNCCGACTTCTACATGGGNGATC
CACGCAAGGCGTGCTATGTGCGGCTTCGGGCNTCGCCGGACNTCGAATGCAANAACCCCACAAACATCAACTACTCTAGC
ATCGAGGGTGCGCCGCTCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23143.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis