Browse Element(s) Details


OsAffx.23143.5.S1_at

Description gb:NM_184489.1
DB_XREF= gi:34896067
GEN=B1189A09.19
TID=OsAffx.23143.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1189A09.19 (B1189A09.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g069404/11pollen Ole e 1 allergen and extensin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06900OsAffx.23141.1.S1_at11/111+3269641..3273218Leucine Rich Repeat family protein, expressed
LOC_Os01g06910OsAffx.1952.1.S1_at10/111+3274107..3274607hypothetical protein
LOC_Os01g06920Os.18302.1.S1_at11/111+3279997..3283159Leucine Rich Repeat family protein, expressed
LOC_Os01g06940OsAffx.23143.5.S1_x_at6/111+3285125..3285692pollen Ole e 1 allergen and extensin family protein, putative, expressed
LOC_Os01g06940OsAffx.23143.5.S1_at4/111+3285125..3285692pollen Ole e 1 allergen and extensin family protein, putative, expressed
LOC_Os01g06940OsAffx.23143.3.S1_x_at1/111+3285125..3285692pollen Ole e 1 allergen and extensin family protein, putative, expressed
LOC_Os01g06950NANA1+3286535..3286999hypothetical protein
LOC_Os01g06960OsAffx.23143.1.S1_x_at9/111+3287563..3288343Pollen proteins Ole e I family protein
LOC_Os01g06960OsAffx.23143.4.S1_s_at2/111+3287563..3288343Pollen proteins Ole e I family protein
LOC_Os01g06960OsAffx.23143.3.S1_x_at1/111+3287563..3288343Pollen proteins Ole e I family protein
LOC_Os01g06970NANA1+3289787..3290291hypothetical protein
LOC_Os01g06980OsAffx.23143.3.S1_x_at11/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980OsAffx.23143.3.S1_at11/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980OsAffx.23143.1.S1_x_at3/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980OsAffx.23143.4.S1_s_at1/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06990OsAffx.23143.4.S1_s_at2/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g06990OsAffx.23143.3.S1_x_at2/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g06990OsAffx.23143.1.S1_x_at1/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g07000OsAffx.23143.4.S1_s_at11/111+3297244..3297812pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g07000OsAffx.23143.1.S1_x_at2/111+3297244..3297812pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g07010OsAffx.23143.1.S1_x_at11/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07010OsAffx.23143.4.S1_s_at2/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07010OsAffx.23143.3.S1_x_at1/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.1.S1_x_at6/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.3.S1_x_at2/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.4.S1_s_at2/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07030OsAffx.10948.1.S1_at11/111+3309264..3310075Pollen proteins Ole e I family protein, expressed
LOC_Os01g07030OsAffx.23143.1.S1_x_at1/111+3309264..3310075Pollen proteins Ole e I family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23143.5.S1_at--415--3391Chr01:3285452..3285558 (25 bp)
CAGCGACAAGCTGTTGGCGGAGGTG
LOC_Os01g06940
OsAffx.23143.5.S1_at--45--3871Chr01:3285442..3285548 (25 bp)
CTGTTGGCGGAGGTGTCTGTCATAT
LOC_Os01g06940
OsAffx.23143.5.S1_at--1133--10851Chr01:3285439..3285461 (23 bp)
TTGGCGGAGGTGTCTGTCATATGCC
LOC_Os01g06940
OsAffx.23143.5.S1_at--495--8891Chr01:3285390..3285414 (25 bp)
TGAGGTGCCATCAGGCCGTCGCCGA
LOC_Os01g06940
OsAffx.23143.5.S1_at--288--9871NONE
TACATGGGTGATCCGCGCGCCCGCA
NONE
OsAffx.23143.5.S1_at--1035--4651Chr01:3284110..3284134 (25 bp)
GCGTGCATCCCACTCGGAGGACTCG
NONE
OsAffx.23143.5.S1_at--1149--7311Chr01:3284108..3284132 (25 bp)
GTGCATCCCACTCGGAGGACTCGGC
NONE
OsAffx.23143.5.S1_at--861--3531Chr01:3284105..3284129 (25 bp)
CATCCCACTCGGAGGACTCGGCGAA
NONE
OsAffx.23143.5.S1_at--210--1951Chr01:3284099..3284123 (25 bp)
ACTCGGAGGACTCGGCGAACTCCCA
NONE
OsAffx.23143.5.S1_at--932--8011Chr01:3284095..3284119 (25 bp)
GGAGGACTCGGCGAACTCCCAATCC
NONE
OsAffx.23143.5.S1_at--536--5011Chr01:3284060..3284084 (25 bp)
GCAGGCTGTACACCGGAATCCCCAA
NONE
Target Sequence 
CAGCGACAAGCTGTTGGCGGAGGTGTCTGTCATATGCCACGACGCCAAGAATCGCGCAATGGTGAGGTGCCATCAGGCCG
TCGCCGACGATAATGGCTACTTCCGCGCGGAGCTCGATGAGACTAAAGTCTCCGACTTCTACATGGGTGATCCGCGCGCC
CGCACGCCGTCGTGGAGGGGTTGCGCCGCCGCCGCCGCCACTTGCGAGCCCCTCCTCACGTCGTCCTCTCCTCCGCGTGC
ATCCCACTCGGAGGACTCGGCGAACTCCCAATCCCATCCCCACCGCAGGCTGTACACCGGAATCCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23143.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis