Browse Element(s) Details


OsAffx.10943.1.S1_x_at

Description tigr:9629.m04042
TID=OsAffx.10943.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1122011/11transposon protein, putative, unclassified
LOC_Os01g0685210/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11170Os.45173.1.S1_x_at3/1111+6172095..6178899retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g11180OsAffx.18795.1.S1_at10/1111+6185658..6187151hypothetical protein
LOC_Os11g11200OsAffx.30924.1.S1_at11/1111+6191162..6193212hypothetical protein
LOC_Os11g11210Os.52283.1.S1_at11/1111+6196555..6200088ATP-dependent protease La, putative
LOC_Os11g11220OsAffx.10943.1.S1_at11/1111+6203411..6206380transposon protein, putative, unclassified
LOC_Os11g11220OsAffx.10943.1.S1_x_at11/1111+6203411..6206380transposon protein, putative, unclassified
LOC_Os11g11220OsAffx.10943.2.S1_at11/1111+6203411..6206380transposon protein, putative, unclassified
LOC_Os11g11230OsAffx.30925.1.S1_at11/1111+6211658..6212350hypothetical protein
LOC_Os11g11240NANA11+6214176..6217130hypothetical protein
LOC_Os11g11250Os.52908.1.S1_at7/1111+6220825..6221968expressed protein
LOC_Os11g11256NANA11+6223738..6226441hypothetical protein
LOC_Os11g11262NANA11+6228159..6229269retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10943.1.S1_x_at--912--5673Chr01:24244194..24244218 (25 bp)
GACATACTTACCTTCTTGGAACACT
NONE
OsAffx.10943.1.S1_x_at--933--5493Chr01:24244212..24244677 (25 bp)
GAACACTTTGACAGGAGAGACTTGT
NONE
OsAffx.10943.1.S1_x_at--592--292Chr01:24244695..24244719 (25 bp)
ATAGCATCTCGAGCTGCAGAATCTG
NONE
OsAffx.10943.1.S1_x_at--1087--5533Chr01:24244722..24244746 (25 bp)
GAAACATACTTAATGGCTGCCAACA
NONE
OsAffx.10943.1.S1_x_at--619--3293Chr01:24245051..24245075 (25 bp)
CAAAGTGTCCAGTACAAGCAGAGGT
NONE
OsAffx.10943.1.S1_x_at--15--6153Chr01:24245071..24245095 (25 bp)
GAGGTGGTAACACCATCACTGCCAT
NONE
OsAffx.10943.1.S1_x_at--1131--3513Chr01:24245100..24245203 (25 bp)
CATGATGCAGATTCAGGGTCGTTCA
NONE
OsAffx.10943.1.S1_x_at--322--7693Chr01:24245194..24245218 (25 bp)
GGGTCGTTCAGAGATTCCCACTAAC
NONE
OsAffx.10943.1.S1_x_at--460--10653Chr01:24245208..24245232 (25 bp)
TTCCCACTAACTACAATCACATGCA
NONE
OsAffx.10943.1.S1_x_at--761--5133Chr01:24245230..24245254 (25 bp)
GCAAATGCCAGACTACTATCATGTT
NONE
OsAffx.10943.1.S1_x_at--1021--7773Chr01:24245258..24245282 (25 bp)
GGTGCTTCATTACTTCAGTCATCTG
NONE
Target Sequence 
GACATACTTACCTTCTTGGAACACTTTGACAGGAGAGACTTGTGCAGAATGTTTGTTAAAATAGCATCTCGAGCTGCAGA
ATCTGATGAAACATACTTAATGGCTGCCAACAATGCACAAAAGTTAGCAGAAGATGTGGAGAAATACTTGAGTATAAGGC
NTGATCCAGATTTGGATAAATCTGGCACAGAGGAAAATGTTGNCCCGAGTAAAGCAAGAGGCATAAAGGTTAANGAGAAA
GCCATTCGTGGGTCGAGGAGACCAATTGGTGGTTTTGACAAGGCAACACAACGGAGTAAAAAGAAAAAGAGTGATTCAAA
CACATCAAAGTGTCCAGTACAAGCAGAGGTGGTAACACCATCACTGCCATACACCATGATGCAGATTCAGGGTCGTTCAG
AGATTCCCACTAACTACAATCACATGCAAATGCCAGACTACTATCATGTTGAAGGTGCTTCATTACTTCAGTCATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10943.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis