Browse Element(s) Details


Os.52283.1.S1_at

Description gb:AK066071.1
DB_XREF= gi:32976089
TID=Os.52283.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52283 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013056B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013056B11, full insert sequence.
FL= gb:AK066071.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1121011/11ATP-dependent protease La, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11170Os.45173.1.S1_x_at3/1111+6172095..6178899retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g11180OsAffx.18795.1.S1_at10/1111+6185658..6187151hypothetical protein
LOC_Os11g11200OsAffx.30924.1.S1_at11/1111+6191162..6193212hypothetical protein
LOC_Os11g11210Os.52283.1.S1_at11/1111+6196555..6200088ATP-dependent protease La, putative
LOC_Os11g11220OsAffx.10943.1.S1_at11/1111+6203411..6206380transposon protein, putative, unclassified
LOC_Os11g11220OsAffx.10943.1.S1_x_at11/1111+6203411..6206380transposon protein, putative, unclassified
LOC_Os11g11220OsAffx.10943.2.S1_at11/1111+6203411..6206380transposon protein, putative, unclassified
LOC_Os11g11230OsAffx.30925.1.S1_at11/1111+6211658..6212350hypothetical protein
LOC_Os11g11240NANA11+6214176..6217130hypothetical protein
LOC_Os11g11250Os.52908.1.S1_at7/1111+6220825..6221968expressed protein
LOC_Os11g11256NANA11+6223738..6226441hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0004176molecular_functionATP-dependent peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52283.1.S1_at--1114--7751Chr11:6197641..6197665 (25 bp)
GGTGATGTTTCTCCCATTATGGACA
LOC_Os11g11210
Os.52283.1.S1_at--867--6971Chr11:6197437..6197461 (25 bp)
GTACCTGAGGATGAACCATTGCAAA
LOC_Os11g11210
Os.52283.1.S1_at--523--10011Chr11:6197419..6197443 (25 bp)
TTGCAAACTAACATCAAGGCCTCCC
LOC_Os11g11210
Os.52283.1.S1_at--301--4451Chr11:6197401..6197425 (25 bp)
GCCTCCCTGTTGTGGTCTGAAAAAG
LOC_Os11g11210
Os.52283.1.S1_at--498--2991Chr11:6197359..6197383 (25 bp)
AATGAAGGTTTTATCCCTGCGCTAC
LOC_Os11g11210
Os.52283.1.S1_at--168--10291Chr11:6197320..6197344 (25 bp)
TTTGCTGCGTACCAGACTGTTTCAG
LOC_Os11g11210
Os.52283.1.S1_at--85--2731Chr11:6196941..6196965 (25 bp)
AAGCAGAACTTCTTTCCCTGCAAAA
LOC_Os11g11210
Os.52283.1.S1_at--965--6911Chr11:6196836..6196860 (25 bp)
GTATGATCGCTGCAAGACTGGCAAT
LOC_Os11g11210
Os.52283.1.S1_at--438--271Chr11:6196804..6196828 (25 bp)
ATATGATCCTCACTATGCTGTCACT
LOC_Os11g11210
Os.52283.1.S1_at--403--351Chr11:6196736..6196760 (25 bp)
ATAACTGATCGTGCCTATGATGTGA
LOC_Os11g11210
Os.52283.1.S1_at--696--5391Chr11:6196702..6196726 (25 bp)
GAAGCATTTGCAGAGCCAGAATTTT
LOC_Os11g11210
Target Sequence 
GGTGATGTTTCTCCCATTATGGACATATCTTCCGAGAGTATTGAATTGGGATTAAGAATTTCCAAGCTAAGAGAGTCTAT
GTGTAATTTACACAGTCTACAGATGAAACTGAAGGTACCTGAGGATGAACCATTGCAAACTAACATCAAGGCCTCCCTGT
TGTGGTCTGAAAAAGAAATTTTTGAGGAGTATAATGAAGGTTTTATCCCTGCGCTACCCGAACGTCTCTCCTTTGCTGCG
TACCAGACTGTTTCAGGTATGTCAGAAGCAGAACTTCTTTCCCTGCAAAAATATAAGATACAAGCAATGGATTCAACAAA
CACTCTTGAAAGACTAAACAGTGGGATTGAGTATGTAGAACATAATATTGGTATGATCGCTGCAAGACTGGCAATTCAGA
ATATATGATCCTCACTATGCTGTCACTCATGTAACATTATCATCAGGGAAGTGATATTTACTTATTTGATATAACTGATC
GTGCCTATGATGTGAGGTGTAGTTGAAGCATTTGCAGAGCCAGAATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis