Browse Element(s) Details


Os.52908.1.S1_at

Description gb:AK069850.1
DB_XREF= gi:32979874
TID=Os.52908.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52908 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023034F19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023034G19, full insert sequence.
FL= gb:AK099123.1 gb:AK069850.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g112507/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11210Os.52283.1.S1_at11/1111+6196555..6200088ATP-dependent protease La, putative
LOC_Os11g11220OsAffx.10943.1.S1_at11/1111+6203411..6206380transposon protein, putative, unclassified
LOC_Os11g11220OsAffx.10943.1.S1_x_at11/1111+6203411..6206380transposon protein, putative, unclassified
LOC_Os11g11220OsAffx.10943.2.S1_at11/1111+6203411..6206380transposon protein, putative, unclassified
LOC_Os11g11230OsAffx.30925.1.S1_at11/1111+6211658..6212350hypothetical protein
LOC_Os11g11240NANA11+6214176..6217130hypothetical protein
LOC_Os11g11250Os.52908.1.S1_at7/1111+6220825..6221968expressed protein
LOC_Os11g11256NANA11+6223738..6226441hypothetical protein
LOC_Os11g11262NANA11+6228159..6229269retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g11270OsAffx.18796.1.S1_at11/1111+6233231..6233735hypothetical protein
LOC_Os11g11280NANA11+6242046..6245034hypothetical protein
LOC_Os11g11290OsAffx.10596.1.S1_x_at1/1111+6245642..6251771retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52908.1.S1_at--733--6371NONE
GATCCCTTCAAAAGCGACCATCTAA
NONE
Os.52908.1.S1_at--641--9911Chr11:6221525..6221549 (25 bp)
TACTGGAAATCGGTGCTGTCTGCCC
LOC_Os11g11250
Os.52908.1.S1_at--496--7151Chr11:6221542..6221566 (25 bp)
GTCTGCCCGTTTGCCGGTGAAGATA
LOC_Os11g11250
Os.52908.1.S1_at--534--5351Chr11:6221560..6221584 (25 bp)
GAAGATAGTTCCACCCTGTGAACCA
LOC_Os11g11250
Os.52908.1.S1_at--529--8191NONE
GGAAGGACTTGCAACCGCCAAACAA
NONE
Os.52908.1.S1_at--1039--5231Chr11:6221680..6221704 (25 bp)
GAATCTTGTTTCGACGTCAAAGCCC
LOC_Os11g11250
Os.52908.1.S1_at--210--7071Chr11:6221695..6221719 (25 bp)
GTCAAAGCCCCGATTGGCAAGCAAT
LOC_Os11g11250
Os.52908.1.S1_at--406--10711Chr11:6221748..6221772 (25 bp)
TTGCTGCGATGTCTCTTAAGGTGTT
LOC_Os11g11250
Os.52908.1.S1_at--522--4731Chr11:6221936..6221960 (25 bp)
GCTGTGCTAGAATCTGTGTTCGTGT
LOC_Os11g11250
Os.52908.1.S1_at--97--7431Chr11:6221951..6221975 (25 bp)
GTGTTCGTGTTCTTTTGACCTTCGT
NONE
Os.52908.1.S1_at--571--31Chr11:6222094..6222118 (25 bp)
ATTGTGCTATCTTTGGGAGTGCCTT
NONE
Target Sequence 
GATCCCTTCAAAAGCGACCATCTAAACTACTGGTCCTAAAAGAAGCGAGAGATAAGTTCTTTCCATACTGGAAATCGGTG
CTGTCTGCCCGTTTGCCGGTGAAGATAGTTCCACCCTGTGAACCAAGCAGCAATGACATACAAAGGACTGAACCAAGGAA
GGACATCCTAAGTACTGAAGCAAGCAGGAAGGACTTGCAACCGCCAAACAAATCAATCGCGAATCTTGTTTCGACGTCAA
AGCCCCGATTGGCAAGCAATTATGAATGCAGGAGGCAGCTTTGTGCTCTTGCTGCGATGTCTCTTAAGGTGTTGAGGCGC
ACGTGAGTGAATCTATATGGCTTGGTAAAGACGAAAGTATCGGCGGCATGAGAGTAGCTGTGCTAGAATCTGTGTTCGTG
TTCTTTTGACCTTCGTGGCCGTGTTATATTAACATGTATGTACTTGTCATGAAAATAAGATATATATATACCAGATGTAA
TGTATTTCAGGCTTGATGCAACCTGGTAACTTGGTAAGATTTCTAGCTGAACACATTGTGCTATCTTTGGGAGTGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52908.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis