Browse Element(s) Details


OsAffx.18796.1.S1_at

Description tigr:9639.m01070
TID=OsAffx.18796.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1127011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11230OsAffx.30925.1.S1_at11/1111+6211658..6212350hypothetical protein
LOC_Os11g11240NANA11+6214176..6217130hypothetical protein
LOC_Os11g11250Os.52908.1.S1_at7/1111+6220825..6221968expressed protein
LOC_Os11g11256NANA11+6223738..6226441hypothetical protein
LOC_Os11g11262NANA11+6228159..6229269retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g11270OsAffx.18796.1.S1_at11/1111+6233231..6233735hypothetical protein
LOC_Os11g11280NANA11+6242046..6245034hypothetical protein
LOC_Os11g11290OsAffx.10596.1.S1_x_at1/1111+6245642..6251771retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18796.1.S1_at--1147--3911Chr11:6233618..6233642 (25 bp)
CGGCCAGATCTGAGACAGAGAAAGA
LOC_Os11g11270
OsAffx.18796.1.S1_at--515--5811Chr11:6233445..6233469 (25 bp)
GACCGAGGAAGTAGACAAGGACCGA
LOC_Os11g11270
OsAffx.18796.1.S1_at--126--851Chr11:6233444..6233468 (25 bp)
ACCGAGGAAGTAGACAAGGACCGAG
LOC_Os11g11270
OsAffx.18796.1.S1_at--534--3211Chr11:6233430..6233454 (25 bp)
CAAGGACCGAGGGAGAGATGCGTGT
LOC_Os11g11270
OsAffx.18796.1.S1_at--1083--1311Chr11:6233272..6233441 (25 bp)
AGAGATGCGTGTGCGGGTGCCGGTT
LOC_Os11g11270
OsAffx.18796.1.S1_at--243--7791Chr11:6233281..6233305 (25 bp)
GGTGCCGGTTCTAGCGTGTTTAAAG
LOC_Os11g11270
OsAffx.18796.1.S1_at--342--7191Chr11:6233280..6233304 (25 bp)
GTGCCGGTTCTAGCGTGTTTAAAGG
LOC_Os11g11270
OsAffx.18796.1.S1_at--235--4471Chr11:6233278..6233302 (25 bp)
GCCGGTTCTAGCGTGTTTAAAGGTG
LOC_Os11g11270
OsAffx.18796.1.S1_at--186--7891Chr11:6233275..6233299 (25 bp)
GGTTCTAGCGTGTTTAAAGGTGCCG
LOC_Os11g11270
OsAffx.18796.1.S1_at--43--10571Chr11:6233273..6233297 (25 bp)
TTCTAGCGTGTTTAAAGGTGCCGGT
LOC_Os11g11270
OsAffx.18796.1.S1_at--1138--9531Chr11:6233272..6233296 (25 bp)
TCTAGCGTGTTTAAAGGTGCCGGTT
LOC_Os11g11270
Target Sequence 
CGGCCAGATCTGAGACAGAGAAAGAGAGGGGAGCTCGCTGCCTCCGCCAGGCAGCCACCGGCTGCGGGAGCCCGCCGCCT
CCGCCGGGCAGCCACCGAGAGAGAGAGGGGAGCTGGGGAGGGAGAGAGACGTGAGAAAGAGAGGGGAGGGAGAGAGATGC
GAGAGATTGAGGGGACCGAGGAAGTAGACAAGGACCGAGGGAGAGATGCGTGTGCGGGTGCCGGTTCTAGCGTGTTTAAA
GGTGCCGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18796.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis