Browse Element(s) Details


OsAffx.18795.1.S1_at

Description tigr:9639.m01061
TID=OsAffx.18795.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1118010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11140OsAffx.8801.1.S1_at2/1111+6157448..6162009transposon protein, putative, unclassified
LOC_Os11g11140OsAffx.21605.1.S1_at1/1111+6157448..6162009transposon protein, putative, unclassified
LOC_Os11g11140Os.9332.2.S1_x_at1/1111+6157448..6162009transposon protein, putative, unclassified
LOC_Os11g11150NANA11+6162367..6164921retrotransposon protein, putative, unclassified
LOC_Os11g11160Os.45173.1.S1_x_at3/1111+6167789..6169935retrotransposon protein, putative, unclassified
LOC_Os11g11160OsAffx.18229.1.S1_x_at1/1111+6167789..6169935retrotransposon protein, putative, unclassified
LOC_Os11g11170Os.45173.1.S1_x_at3/1111+6172095..6178899retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g11180OsAffx.18795.1.S1_at10/1111+6185658..6187151hypothetical protein
LOC_Os11g11200OsAffx.30924.1.S1_at11/1111+6191162..6193212hypothetical protein
LOC_Os11g11210Os.52283.1.S1_at11/1111+6196555..6200088ATP-dependent protease La, putative
LOC_Os11g11220OsAffx.10943.1.S1_at11/1111+6203411..6206380transposon protein, putative, unclassified
LOC_Os11g11220OsAffx.10943.1.S1_x_at11/1111+6203411..6206380transposon protein, putative, unclassified
LOC_Os11g11220OsAffx.10943.2.S1_at11/1111+6203411..6206380transposon protein, putative, unclassified
LOC_Os11g11230OsAffx.30925.1.S1_at11/1111+6211658..6212350hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18795.1.S1_at--162--3531Chr11:6186753..6186777 (25 bp)
CATGCTCGTGCGTCCCAAGGAGTGG
LOC_Os11g11180
OsAffx.18795.1.S1_at--811--4172Chr09:1170604..1170626 (23 bp)
CCCAAGGAGTGGGACTGCTGCATCA
NONE
OsAffx.18795.1.S1_at--909--9091Chr11:6186725..6186749 (25 bp)
TGCTGCATCACCTTTGACTATGTCC
LOC_Os11g11180
OsAffx.18795.1.S1_at--652--4731NONE
GCTGTCGCTCACTGGAGCCAAGAGA
NONE
OsAffx.18795.1.S1_at--101--5871Chr11:6186179..6186203 (25 bp)
GAGCCAAGAGACGACACCATCCTGA
LOC_Os11g11180
OsAffx.18795.1.S1_at--573--1371Chr11:6186030..6186053 (24 bp)
AGAGCTCAAGCGGATGTGTGCCCCG
LOC_Os11g11180
OsAffx.18795.1.S1_at--551--4011Chr11:6185935..6185959 (25 bp)
CGTCCTCTAGTGTCGATTTGTCTAT
LOC_Os11g11180
OsAffx.18795.1.S1_at--1159--4031Chr11:6185922..6185946 (25 bp)
CGATTTGTCTATCGAGGATCTCCTC
LOC_Os11g11180
OsAffx.18795.1.S1_at--502--3191Chr11:6185839..6185863 (25 bp)
CAATGCTCGTGCGTGCCAAGGAGCG
LOC_Os11g11180
OsAffx.18795.1.S1_at--128--1511Chr11:6185804..6185828 (25 bp)
AGCACCTTCGACTATGTCTGCCCTT
LOC_Os11g11180
OsAffx.18795.1.S1_at--793--9332Chr11:6185740..6185764 (25 bp)
TCGCCGCTCGTCAGTGCGGGAAGAA
LOC_Os11g11180
Target Sequence 
CATGCTCGTGCGTCCCAAGGAGTGGGACTGCTGCATCACCTTTGACTATGTCCGCCCTTGTCGCCTCACGCGCTGTCGCT
CACTGGAGCCAAGAGACGACACCATCCTGATGTGGAGGACGAAGAAGCACAACAAGATCCTCCAGATGGAGGAGTCGCTC
ACCGACGGGAGGAAGCTGAACAAGGAGCAGGAAGAGCTCAAGCGGATGTGTGCCCCGCTCGCCACCGCACTTGCTGAGGA
GCTCTCCTCCCGTCCCGCTCGTTCCCCATCCACCGTCGCGTCCTCCTCGTCCTCTAGTGTCGATTTGTCTATCGAGGATC
TCCTCGCGCTCATCTACTTCGGCTCCCTCTTCGACGTCAAGCCACAGACCGAGTTCGTCGCCACAATGCTCGTGCGTGCC
AAGGAGCGGGACTGCTGCAGCACCTTCGACTATGTCTGCCCTTGTCGCCTCACGCCCTGTCACTCACCGGTCTCGCCGCC
ACTCGCCGCTCGTCAGTGCGGGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18795.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis