Browse Element(s) Details


OsAffx.21605.1.S1_at

Description gb:NM_191308.1
DB_XREF= gi:34909699
GEN=B1131G08.8
TID=OsAffx.21605.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1131G08.8 (B1131G08.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g111401/11transposon protein, putative, unclassified
LOC_Os08g052501/11retrotransposon protein, putative, unclassified
LOC_Os07g263501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11090NANA11+6133967..6134269hypothetical protein
LOC_Os11g11100Os.23107.1.S1_at11/1111+6138499..6142082bZIP transcription factor family protein, expressed
LOC_Os11g11110Os.23036.1.A1_at11/1111+6142302..6143884expressed protein
LOC_Os11g11120Os.2987.3.S1_x_at2/1111+6145783..6147499retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g11130NANA11+6151310..6153310hypothetical protein
LOC_Os11g11140OsAffx.8801.1.S1_at2/1111+6157448..6162009transposon protein, putative, unclassified
LOC_Os11g11140OsAffx.21605.1.S1_at1/1111+6157448..6162009transposon protein, putative, unclassified
LOC_Os11g11140Os.9332.2.S1_x_at1/1111+6157448..6162009transposon protein, putative, unclassified
LOC_Os11g11150NANA11+6162367..6164921retrotransposon protein, putative, unclassified
LOC_Os11g11160Os.45173.1.S1_x_at3/1111+6167789..6169935retrotransposon protein, putative, unclassified
LOC_Os11g11160OsAffx.18229.1.S1_x_at1/1111+6167789..6169935retrotransposon protein, putative, unclassified
LOC_Os11g11170Os.45173.1.S1_x_at3/1111+6172095..6178899retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g11180OsAffx.18795.1.S1_at10/1111+6185658..6187151hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21605.1.S1_at--445--2431Chr01:32213283..32213307 (25 bp)
AAAACCTCGTTTGCGCTGCTTTTGT
NONE
OsAffx.21605.1.S1_at--973--6771Chr01:32213240..32213264 (25 bp)
GTTACGTGCAAGTCGATCCAATCAT
NONE
OsAffx.21605.1.S1_at--259--3031Chr01:32213221..32213245 (25 bp)
AATCATCCGCTTCTTGTAGGGACTA
NONE
OsAffx.21605.1.S1_at--444--2491Chr01:32213172..32213196 (25 bp)
AACAGTACGTCTTGCTCTTGCATCT
NONE
OsAffx.21605.1.S1_at--435--7191Chr01:32213132..32213155 (24 bp)
GTCGGCTTCGCCAAAGTCGTTTTGA
NONE
OsAffx.21605.1.S1_at--636--4031Chr12:26377443..26377686 (25 bp)
CGTTTTGATGTTAGCCGATTGTGGG
NONE
OsAffx.21605.1.S1_at--508--6051NONE
GAGATTATCCGATTCCTACTCTGTT
NONE
OsAffx.21605.1.S1_at--1088--97312Chr12:16035461..16035485 (25 bp)
TAATCTTCTTTTCCGATGCCGATGT
NONE
OsAffx.21605.1.S1_at--762--10211Chr01:32210579..32210603 (25 bp)
TATTCGATGAGATTTCCCGGCGGCT
NONE
OsAffx.21605.1.S1_at--962--4631Chr01:32210547..32210571 (25 bp)
GCGTACCCCGGCTTTGTAAACTATG
NONE
OsAffx.21605.1.S1_at--453--7691Chr01:32209722..32209746 (25 bp)
GGGTCGGCTGCTTCAACTTTGAGGT
NONE
Target Sequence 
AAAACCTCGTTTGCGCTGCTTTTGTTATGTATCAACTTGTTATGTTACGTGCAAGTCGATCCAATCATCCGCTTCTTGTA
GGGACTAATGGACTATGTTGGTGTGAGAAGCAACAGTACGTCTTGCTCTTGCATCTCTCTGCAAGCATCACCGTCGGCTT
CGCCAAAGTCGTTTTGATGTTAGCCGATTGTGGGTTAGATGGCGATATTGCTAGAGATTATCCGATTCCTACTCTGTTCC
CGAATCGATCTCCGCCTCCGACTCCACTTCGATCTAATCTTCTTTTCCGATGCCGATGTTACCAAATTTGGTTGTTAACA
AGTACTGTGGAAGTAGATGAATTCGATGATACCGACAAGATCGTAGTCGATTTATTCGATGAGATTTCCCGGCGGCTTGG
CTCCGCGTACCCCGGCTTTGTAAACTATGGCGGACGGCGCGCGGGCGACGACTGGAAGGGTCGGGTGACTCGGGTCGGCT
GCTTCAACTTTGAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21605.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis