Browse Element(s) Details


Os.23107.1.S1_at

Description gb:AK072267.1
DB_XREF= gi:32982290
TID=Os.23107.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23107 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004I18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004I18, full insert sequence.
FL= gb:AK072267.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1110011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11070Os.25108.1.S1_at11/1111+6110262..6119394mRNA capping enzyme, C-terminal domain containing protein, expressed
LOC_Os11g11080OsAffx.7071.1.S1_at11/1111+6126031..6126300hypothetical protein
LOC_Os11g11090NANA11+6133967..6134269hypothetical protein
LOC_Os11g11100Os.23107.1.S1_at11/1111+6138499..6142082bZIP transcription factor family protein, expressed
LOC_Os11g11110Os.23036.1.A1_at11/1111+6142302..6143884expressed protein
LOC_Os11g11120Os.2987.3.S1_x_at2/1111+6145783..6147499retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g11130NANA11+6151310..6153310hypothetical protein
LOC_Os11g11140OsAffx.8801.1.S1_at2/1111+6157448..6162009transposon protein, putative, unclassified
LOC_Os11g11140OsAffx.21605.1.S1_at1/1111+6157448..6162009transposon protein, putative, unclassified
LOC_Os11g11140Os.9332.2.S1_x_at1/1111+6157448..6162009transposon protein, putative, unclassified
LOC_Os11g11150NANA11+6162367..6164921retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23107.1.S1_at--1049--5991Chr11:6141485..6141509 (25 bp)
GAGACCTGGATTCACAGTTTGCTAA
LOC_Os11g11100
Os.23107.1.S1_at--68--9911Chr11:6141552..6141576 (25 bp)
TACTCAGTCCTCGTCAATCTTGTGA
LOC_Os11g11100
Os.23107.1.S1_at--933--8891Chr11:6141574..6141598 (25 bp)
TGAGTTCCACACAAAGTTGCCACAA
LOC_Os11g11100
Os.23107.1.S1_at--455--10691Chr11:6141590..6141614 (25 bp)
TTGCCACAACTCCTAGATAACTCTT
LOC_Os11g11100
Os.23107.1.S1_at--478--351Chr11:6141606..6141630 (25 bp)
ATAACTCTTTGTGGCTGTCATCTGC
LOC_Os11g11100
Os.23107.1.S1_at--182--10411Chr11:6141728..6141752 (25 bp)
TTTTGGAATATGCACCTGGCGGTCA
LOC_Os11g11100
Os.23107.1.S1_at--408--4831Chr11:6141759..6141783 (25 bp)
GCTCACTTCCATTGTTGATGCTCGA
LOC_Os11g11100
Os.23107.1.S1_at--1047--151Chr11:6141829..6141853 (25 bp)
ATTATCGCATCGTTGTACCATTTTC
LOC_Os11g11100
Os.23107.1.S1_at--666--3871Chr11:6141884..6141908 (25 bp)
CTGTTCCCTGTGATCATGCATTATG
LOC_Os11g11100
Os.23107.1.S1_at--648--6551Chr11:6141922..6141946 (25 bp)
GATTAGTCTTGCCTTTATCAATGGA
LOC_Os11g11100
Os.23107.1.S1_at--643--2831Chr11:6142057..6142081 (25 bp)
AAGTATTAGCGTTGTTCAGTGTTCC
LOC_Os11g11100
Target Sequence 
GAGACCTGGATTCACAGTTTGCTAATCTGTCTCTGAAACACAAAGACCCCAACTCTGGGCCTCTTCGTACTCAGTCCTCG
TCAATCTTGTGAGTTCCACACAAAGTTGCCACAACTCCTAGATAACTCTTTGTGGCTGTCATCTGCATCAAGAAAGGAGC
AGGCGCACCTGGAATCGTGTACCCCCATCTATGGTGAATAATAACACTGGAAAGGCTAATAACTGTGGATCTGATCTTTA
TTCTTTTGGAATATGCACCTGGCGGTCATCCTCAGCTCACTTCCATTGTTGATGCTCGACCAGTCGGAGGTGTTTAGGGT
TTTTCTTTGTAGTTTGATGCTTTTATTATCGCATCGTTGTACCATTTTCGNAATGCTAGGGTTCTAATTTGTTACCGTCC
TGTTCCCTGTGATCATGCATTATGTTAGCGATATTTGGATTAGTCTTGCCTTTATCAATGGAATGTGGAGCACTAGTCAG
CATNTGGTACATACAGATGTTTTGAAATTGTGCCACATCCTTGAGAAACCGTATGTGTTGTAACATTGTTATTCAATAAG
CTAGTGCAAATGAAGTATTAGCGTTGTTCAGTGTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis