Browse Element(s) Details


OsAffx.7071.1.S1_at

Description tigr:9639.m01052
TID=OsAffx.7071.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1108011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11050Os.12719.2.S1_at11/1111+6096648..6101955Initiation factor 2 subunit family protein, expressed
LOC_Os11g11050Os.12719.1.S1_at10/1111+6096648..6101955Initiation factor 2 subunit family protein, expressed
LOC_Os11g11050Os.26865.1.S1_at1/1111+6096648..6101955Initiation factor 2 subunit family protein, expressed
LOC_Os11g11060Os.53099.1.S1_at11/1111+6105046..6109195GHMP kinases putative ATP-binding protein, expressed
LOC_Os11g11060Os.38770.1.S1_at3/1111+6105046..6109195GHMP kinases putative ATP-binding protein, expressed
LOC_Os11g11070Os.25108.1.S1_at11/1111+6110262..6119394mRNA capping enzyme, C-terminal domain containing protein, expressed
LOC_Os11g11080OsAffx.7071.1.S1_at11/1111+6126031..6126300hypothetical protein
LOC_Os11g11090NANA11+6133967..6134269hypothetical protein
LOC_Os11g11100Os.23107.1.S1_at11/1111+6138499..6142082bZIP transcription factor family protein, expressed
LOC_Os11g11110Os.23036.1.A1_at11/1111+6142302..6143884expressed protein
LOC_Os11g11120Os.2987.3.S1_x_at2/1111+6145783..6147499retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7071.1.S1_at--976--2191Chr11:6126234..6126258 (25 bp)
ACAAAGCAGCTTGATGACAAGTCGA
LOC_Os11g11080
OsAffx.7071.1.S1_at--838--2211Chr11:6126218..6126242 (25 bp)
ACAAGTCGATGGAAGATGAGAACCC
LOC_Os11g11080
OsAffx.7071.1.S1_at--552--7911Chr11:6126193..6126217 (25 bp)
GGTTGCTGATCATCCCAAGAAGCAA
LOC_Os11g11080
OsAffx.7071.1.S1_at--384--4751Chr11:6126189..6126213 (25 bp)
GCTGATCATCCCAAGAAGCAAATGA
LOC_Os11g11080
OsAffx.7071.1.S1_at--954--9312Chr12:8540345..8540380 (24 bp)
TCCCAAGAAGCAAATGAGATCCATG
NONE
OsAffx.7071.1.S1_at--955--3291Chr11:6126171..6126195 (25 bp)
CAAATGAGATCCATGCAGAGGTACT
LOC_Os11g11080
OsAffx.7071.1.S1_at--668--6031Chr11:6126166..6126190 (25 bp)
GAGATCCATGCAGAGGTACTACCAC
LOC_Os11g11080
OsAffx.7071.1.S1_at--306--6371Chr11:6126164..6126188 (25 bp)
GATCCATGCAGAGGTACTACCACAA
LOC_Os11g11080
OsAffx.7071.1.S1_at--700--5611Chr11:6126114..6126138 (25 bp)
GACAACGCCACGCAGACTGCTGGAG
LOC_Os11g11080
OsAffx.7071.1.S1_at--53--1831Chr11:6126110..6126134 (25 bp)
ACGCCACGCAGACTGCTGGAGCAGA
LOC_Os11g11080
OsAffx.7071.1.S1_at--32--1451Chr11:6126061..6126085 (25 bp)
AGAAGAGTTGGTCGCTAATATGTGG
LOC_Os11g11080
Target Sequence 
ACAAAGCAGCTTGATGACAAGTCGATGGAAGATGAGAACCCGGTTGCTGATCATCCCAAGAAGCAAATGAGATCCATGCA
GAGGTACTACCACAAGGGTAGCTTCTTCCAACAAGACGCCGACAACGCCACGCAGACTGCTGGAGCAGAGGGAGAGGGAG
AGGGAGATGAGGGAGAAGAGTTGGTCGCTAATATGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis