Browse Element(s) Details


Os.55647.1.A1_at

Description gb:AK108484.1
DB_XREF= gi:32993693
TID=Os.55647.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55647 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-F07, full insert sequence.
FL= gb:AK108484.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0688211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06810NANA1+3227687..3232070retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g06820NANA1+3232789..3234601Leucine Rich Repeat family protein
LOC_Os01g06836Os.12941.1.S1_at1/111+3237929..3240117Leucine Rich Repeat family protein
LOC_Os01g06852OsAffx.10943.1.S1_x_at10/111+3243801..3246770transposon protein, putative, unclassified
LOC_Os01g06852OsAffx.10943.2.S1_at9/111+3243801..3246770transposon protein, putative, unclassified
LOC_Os01g06852OsAffx.10943.1.S1_at5/111+3243801..3246770transposon protein, putative, unclassified
LOC_Os01g06870NANA1+3248006..3249526Leucine Rich Repeat family protein, expressed
LOC_Os01g06876Os.55776.1.S1_at11/111+3253624..3254703Leucine Rich Repeat family protein, expressed
LOC_Os01g06876Os.55776.1.S1_x_at10/111+3253624..3254703Leucine Rich Repeat family protein, expressed
LOC_Os01g06882OsAffx.10944.1.S1_at11/111+3254746..3255691expressed protein
LOC_Os01g06882OsAffx.10944.1.S1_x_at11/111+3254746..3255691expressed protein
LOC_Os01g06882Os.55647.1.A1_at11/111+3254746..3255691expressed protein
LOC_Os01g06890Os.18302.1.S1_at5/111+3256240..3259256Leucine Rich Repeat family protein
LOC_Os01g06900OsAffx.23141.1.S1_at11/111+3269641..3273218Leucine Rich Repeat family protein, expressed
LOC_Os01g06910OsAffx.1952.1.S1_at10/111+3274107..3274607hypothetical protein
LOC_Os01g06920Os.18302.1.S1_at11/111+3279997..3283159Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55647.1.A1_at--443--2451Chr01:3255373..3255397 (25 bp)
AACATAACAGGCTTTCCGTGGGCCT
LOC_Os01g06882
Os.55647.1.A1_at--376--451Chr01:3255404..3255428 (25 bp)
ATCTCGGCCCGTACATGTCGAAGTA
LOC_Os01g06882
Os.55647.1.A1_at--877--1151Chr01:3255428..3255452 (25 bp)
AGTTGACCTAGTAAACGGCCCACTG
LOC_Os01g06882
Os.55647.1.A1_at--308--1991Chr01:3255449..3255473 (25 bp)
ACTGCCTAGACAGCACATGGACACA
LOC_Os01g06882
Os.55647.1.A1_at--775--3491Chr01:3255464..3255488 (25 bp)
CATGGACACATGGATGGGCCGACAA
LOC_Os01g06882
Os.55647.1.A1_at--525--2511Chr01:3255487..3255511 (25 bp)
AACATCACGGCCTGTTCAGAGACCG
LOC_Os01g06882
Os.55647.1.A1_at--56--1171Chr01:3255541..3255565 (25 bp)
AGTCACGGTCTCACGGAGGCGTAGA
LOC_Os01g06882
Os.55647.1.A1_at--47--2291Chr01:3255581..3255605 (25 bp)
AAATCCTAGATTTCACACTGCTAAT
LOC_Os01g06882
Os.55647.1.A1_at--253--8591Chr01:3255620..3255644 (25 bp)
TGGTAGATGTACACGTTGACGGCAA
LOC_Os01g06882
Os.55647.1.A1_at--12--5751Chr01:3255637..3255661 (25 bp)
GACGGCAAGGCGCATGTAATAATTT
LOC_Os01g06882
Os.55647.1.A1_at--1162--432Chr01:3255667..3255691 (25 bp)
ATCTTAAGATATACCGATCCAGTCT
LOC_Os01g06882
Target Sequence 
AACATAACAGGCTTTCCGTGGGCCTCCAAACATCTCGGCCCGTACATGTCGAAGTAGTTGACCTAGTAAACGGCCCACTG
CCTAGACAGCACATGGACACATGGATGGGCCGACAACATCACGGCCTGTTCAGAGACCGCACCATCGGTCTATCGCGCTC
ACCCGCCCAGTCACGGTCTCACGGAGGCGTAGAAGTGATCGAAGTGTTAAATCCTAGATTTCACACTGCTAATTGTATTT
CTTTTAATGGTAGATGTACACGTTGACGGCAAGGCGCATGTAATAATTTTATTAATCTTAAGATATACCGATCCAGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55647.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis