Browse Element(s) Details


Os.11567.1.S2_a_at

Description gb:AK102807.1
DB_XREF= gi:32988016
TID=Os.11567.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11567 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033108J05, full insert sequence.
FL= gb:AK102807.1 gb:AK106638.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3459011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34550OsAffx.17848.2.S1_at10/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.2.S1_x_at10/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.4.S1_x_at6/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.1.S1_at5/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.3.S1_x_at4/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.5.S1_x_at4/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550Os.54363.1.S1_at3/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.1.S1_x_at3/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.4.S1_at2/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34560Os.21046.1.S1_at11/112+20712022..20716037Neutral/alkaline invertase, putative, expressed
LOC_Os02g34570Os.53185.1.S1_at11/112+20722469..207257703' exoribonuclease family, domain 2 containing protein, expressed
LOC_Os02g34570Os.3282.2.S1_x_at1/112+20722469..207257703' exoribonuclease family, domain 2 containing protein, expressed
LOC_Os02g34580Os.49050.1.S1_at11/112+20728208..20731448Ammonium transporter 2, putative, expressed
LOC_Os02g34590Os.11567.1.S1_a_at11/112+20732046..20735137transposon protein, putative, unclassified, expressed
LOC_Os02g34590Os.11567.1.S2_a_at11/112+20732046..20735137transposon protein, putative, unclassified, expressed
LOC_Os02g34600Os.11782.1.S1_at11/112+20740496..20745452Serine/threonine-protein kinase SAPK7, putative, expressed
LOC_Os02g34600Os.54455.1.S1_at1/112+20740496..20745452Serine/threonine-protein kinase SAPK7, putative, expressed
LOC_Os02g34610NANA2+20747040..20747552expressed protein
LOC_Os02g34620NANA2+20752385..20753121hypothetical protein
LOC_Os02g34630Os.14985.1.S1_at11/112+20757531..20761714Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11567.1.S2_a_at--857--831Chr02:20732606..20732630 (25 bp)
ATGGATGATGAAGCTGCATACTGCA
LOC_Os02g34590
Os.11567.1.S2_a_at--1122--9891Chr02:20732588..20732612 (25 bp)
TACTGCAGCCATGTTATGCGCTATG
LOC_Os02g34590
Os.11567.1.S2_a_at--365--611Chr02:20732573..20732597 (25 bp)
ATGCGCTATGCTTATGACCTTGTTA
LOC_Os02g34590
Os.11567.1.S2_a_at--433--951Chr02:20732522..20732546 (25 bp)
AGGAAATCACTTTGGGAGACTCTTG
LOC_Os02g34590
Os.11567.1.S2_a_at--836--2971Chr02:20732462..20732486 (25 bp)
AATGTTACCCAGTATGCACTTTCCT
LOC_Os02g34590
Os.11567.1.S2_a_at--857--651Chr02:20732449..20732473 (25 bp)
ATGCACTTTCCTATGCCACTTGAAA
LOC_Os02g34590
Os.11567.1.S2_a_at--608--2731Chr02:20732426..20732450 (25 bp)
AAGAAGCATCGACTAACCTTTTAGA
LOC_Os02g34590
Os.11567.1.S2_a_at--960--2631Chr02:20732412..20732436 (25 bp)
AACCTTTTAGACTTACTGCTGACAA
LOC_Os02g34590
Os.11567.1.S2_a_at--999--2791Chr02:20732382..20732406 (25 bp)
AAGATGTACTTCTGGGTTCTTTAGA
LOC_Os02g34590
Os.11567.1.S2_a_at--990--5351Chr02:20732359..20732383 (25 bp)
GAAGATGTGCCCGAGTTTCCACCGA
LOC_Os02g34590
Os.11567.1.S2_a_at--282--5711Chr02:20732336..20732360 (25 bp)
GACTCAGACTCAAACTGTACTCTAA
LOC_Os02g34590
Target Sequence 
ATGGATGATGAAGCTGCATACTGCAGCCATGTTATGCGCTATGCTTATGACCTTGTTACAAAAAGTCAAGGAAACGAGGA
ATTGAGGAAATCACTTTGGGAGACTCTTGAGAGTGGAGAAAAGGAATTGGAAAAATATCTAGAAAATGTTACCCAGTATG
CACTTTCCTATGCCACTTGAAAGAAGCATCGACTAACCTTTTAGACTTACTGCTGACAATGAGAAAGATGTACTTCTGGG
TTCTTTAGAAGATGTGCCCGAGTTTCCACCGACTCAGACTCAAACTGTACTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11567.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis