Browse Element(s) Details


Os.14985.1.S1_at

Description gb:AK068448.1
DB_XREF= gi:32978466
TID=Os.14985.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14985 (NCBI UniGene Cluster)
UG_TITLE=Partial mRNA for putative Myb-family transcription factor (myb-L1 gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152C15, full insert sequence.
FL= gb:AK068448.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3463011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34590Os.11567.1.S1_a_at11/112+20732046..20735137transposon protein, putative, unclassified, expressed
LOC_Os02g34590Os.11567.1.S2_a_at11/112+20732046..20735137transposon protein, putative, unclassified, expressed
LOC_Os02g34600Os.11782.1.S1_at11/112+20740496..20745452Serine/threonine-protein kinase SAPK7, putative, expressed
LOC_Os02g34600Os.54455.1.S1_at1/112+20740496..20745452Serine/threonine-protein kinase SAPK7, putative, expressed
LOC_Os02g34610NANA2+20747040..20747552expressed protein
LOC_Os02g34620NANA2+20752385..20753121hypothetical protein
LOC_Os02g34630Os.14985.1.S1_at11/112+20757531..20761714Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g34640OsAffx.24574.1.S1_at11/112+20770379..20771216expressed protein
LOC_Os02g34650Os.27459.1.A1_at11/112+20776225..20780085expressed protein
LOC_Os02g34650OsAffx.24575.1.S1_x_at11/112+20776225..20780085expressed protein
LOC_Os02g34660OsAffx.5954.1.S1_x_at5/112+20785698..20788668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g34660OsAffx.5954.3.S1_x_at3/112+20785698..20788668retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14985.1.S1_at--236--8731Chr02:20758092..20758116 (25 bp)
TGTCTAGCGGCATAGTTGGCGTGCT
LOC_Os02g34630
Os.14985.1.S1_at--940--911Chr02:20758025..20758049 (25 bp)
AGGCACCCAAAGTACTGTCCAGAAG
LOC_Os02g34630
Os.14985.1.S1_at--317--1471Chr02:20757960..20757984 (25 bp)
AGAATGTGGCGCCTGGCACCGTAAC
LOC_Os02g34630
Os.14985.1.S1_at--709--3151Chr02:20757849..20757873 (25 bp)
AATTCCTTGCTATAATAACGCCCTA
LOC_Os02g34630
Os.14985.1.S1_at--1110--4531Chr02:20757830..20757854 (25 bp)
GCCCTAGGACTTTTGTGCGCTTAGT
LOC_Os02g34630
Os.14985.1.S1_at--718--3091Chr02:20757789..20757813 (25 bp)
AATAGGGCCACGTAGATACCATCTA
LOC_Os02g34630
Os.14985.1.S1_at--141--6971Chr02:20757742..20757766 (25 bp)
GTAGCTCAATTCCTTTCTGAACCAA
LOC_Os02g34630
Os.14985.1.S1_at--1040--7931Chr02:20757689..20757713 (25 bp)
GGATACACCGTTTAATCGCTTTGCC
LOC_Os02g34630
Os.14985.1.S1_at--611--6691Chr02:20757638..20757662 (25 bp)
GTTCCATTTGTTAAGCTGGCCTGAG
LOC_Os02g34630
Os.14985.1.S1_at--158--8471Chr02:20757622..20757646 (25 bp)
TGGCCTGAGATTATCATGCCGCCTT
LOC_Os02g34630
Os.14985.1.S1_at--866--2391Chr02:20757538..20757562 (25 bp)
AAACTATGTCATTGTGGCCTGATCA
LOC_Os02g34630
Target Sequence 
TGTCTAGCGGCATAGTTGGCGTGCTGAATAGATCATTAGGAGGGAAGGCACCTGCTCCTGCTACCACAGGCACCCAAAGT
ACTGTCCAGAAGCAGCAAAGCATGAGCTCAAAGGGCAACTTGTTAGTGCCCAAGAATGTGGCGCCTGGCACCGTAACACC
AGCCAACAACCGGGCCAACACAGCGGTGAACGGGGCTAGCAAGGTGAATCCACCAGCCAGCCAGAAGCCAGCCTAACATG
GTAAATTCCTTGCTATAATAACGCCCTAGGACTTTTGTGCGCTTAGTTTACTTTTGAAATGTAAATAGGGCCACGTAGAT
ACCATCTATTCTTTGCCCNCCTTTGCATTTGTAGCTCAATTCCTTTCTGAACCAAAGCACTGGTGAAAACATTAGGTTAN
ACTGGATACACCGTTTAATCGCTTTGCCTTCTCTGTGNNGTCTTAGACTGATATGTTCCATTTGTTAAGCTGGCCTGAGA
TTATCATGCCGCCTTCCTGTACAGCCTCGCCTCTTTCTCCGTTGGATAGTTTGGTTGATTGGCCAAATATTCAGAAACTA
TGTCATTGTGGCCTGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis