Browse Element(s) Details


Os.27459.1.A1_at

Description gb:AK106428.1
DB_XREF= gi:32991637
TID=Os.27459.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27459 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B12, full insert sequence.
FL= gb:AK106428.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3465011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34620NANA2+20752385..20753121hypothetical protein
LOC_Os02g34630Os.14985.1.S1_at11/112+20757531..20761714Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g34640OsAffx.24574.1.S1_at11/112+20770379..20771216expressed protein
LOC_Os02g34650Os.27459.1.A1_at11/112+20776225..20780085expressed protein
LOC_Os02g34650OsAffx.24575.1.S1_x_at11/112+20776225..20780085expressed protein
LOC_Os02g34660OsAffx.5954.1.S1_x_at5/112+20785698..20788668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g34660OsAffx.5954.3.S1_x_at3/112+20785698..20788668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g34670OsAffx.5954.5.S1_x_at2/112+20789559..20791046retrotransposon protein, putative, unclassified
LOC_Os02g34680Os.11873.1.S1_at11/112+20795098..20798535Transcription repressor TRM protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27459.1.A1_at--459--1451Chr02:20776686..20776710 (25 bp)
AGAAGCGGCAGTGACCGTGACGTCA
LOC_Os02g34650
Os.27459.1.A1_at--568--8931Chr02:20776675..20776699 (25 bp)
TGACCGTGACGTCACAGCCACCATC
LOC_Os02g34650
Os.27459.1.A1_at--102--9311Chr02:20776644..20776668 (25 bp)
TCCGCCGCAAATTTTGCTCAAACTG
LOC_Os02g34650
Os.27459.1.A1_at--704--3131Chr02:20776635..20776659 (25 bp)
AATTTTGCTCAAACTGTCCACTGCT
LOC_Os02g34650
Os.27459.1.A1_at--318--10731Chr02:20776631..20776655 (25 bp)
TTGCTCAAACTGTCCACTGCTCAAA
LOC_Os02g34650
Os.27459.1.A1_at--1061--9691Chr02:20776627..20776651 (25 bp)
TCAAACTGTCCACTGCTCAAACGCA
LOC_Os02g34650
Os.27459.1.A1_at--18--1971Chr02:20776623..20776647 (25 bp)
ACTGTCCACTGCTCAAACGCAGCGA
LOC_Os02g34650
Os.27459.1.A1_at--257--9711Chr02:20776611..20776635 (25 bp)
TCAAACGCAGCGACGCCGGAAAACC
LOC_Os02g34650
Os.27459.1.A1_at--206--3391Chr02:20776604..20776628 (25 bp)
CAGCGACGCCGGAAAACCGTGAGAA
LOC_Os02g34650
Os.27459.1.A1_at--655--1411Chr02:20776554..20776578 (25 bp)
AGAAATGGAGATGGCCAGATGATGA
LOC_Os02g34650
Os.27459.1.A1_at--724--4351Chr02:20776540..20776564 (25 bp)
CCAGATGATGAGAAACCAAGATCGG
LOC_Os02g34650
Target Sequence 
AGAAGCGGCAGTGACCGTGACGTCACAGCCACCATCTTNTTNTCCGCCGCAAATTTTGCTCAAACTGTCCACTGCTCAAA
CGCAGCGACGCCGGAAAACCGTGAGAAAAAATAAGAGAAAAAAAATCAAGAAAGAAATGGAGATGGCCAGATGATGAGAA
ACCAAGATCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27459.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis