Browse Element(s) Details


Os.11873.1.S1_at

Description gb:AK103760.1
DB_XREF= gi:32988969
TID=Os.11873.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.11873 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033143G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033143G04, full insert sequence.
FL= gb:AK103760.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3468011/11Transcription repressor TRM protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34640OsAffx.24574.1.S1_at11/112+20770379..20771216expressed protein
LOC_Os02g34650Os.27459.1.A1_at11/112+20776225..20780085expressed protein
LOC_Os02g34650OsAffx.24575.1.S1_x_at11/112+20776225..20780085expressed protein
LOC_Os02g34660OsAffx.5954.1.S1_x_at5/112+20785698..20788668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g34660OsAffx.5954.3.S1_x_at3/112+20785698..20788668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g34670OsAffx.5954.5.S1_x_at2/112+20789559..20791046retrotransposon protein, putative, unclassified
LOC_Os02g34680Os.11873.1.S1_at11/112+20795098..20798535Transcription repressor TRM protein, putative, expressed
LOC_Os02g34690Os.19281.1.S1_at11/112+20805472..20809714Transmembrane 9 superfamily protein member 3 precursor, putative, expressed
LOC_Os02g34700NANA2+20810233..20811993pentatricopeptide, putative
LOC_Os02g34710OsAffx.24576.1.S1_x_at11/112+20817610..20818650expressed protein
LOC_Os02g34719NANA2+20823053..20823213NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11873.1.S1_at--894--311Chr02:20797946..20797970 (25 bp)
ATACGTCTGTCCTTATGATGGTTGT
LOC_Os02g34680
Os.11873.1.S1_at--956--8691Chr02:20797968..20797992 (25 bp)
TGTGCCAAGGCATACATTCATGAGT
LOC_Os02g34680
Os.11873.1.S1_at--656--1171Chr02:20797990..20798014 (25 bp)
AGTACAAACTTAACCTCCATCTGAA
LOC_Os02g34680
Os.11873.1.S1_at--723--9751Chr02:20798027..20798051 (25 bp)
TAATCACTACCAGGATGCCGGTGCT
LOC_Os02g34680
Os.11873.1.S1_at--416--2671Chr02:20798053..20798077 (25 bp)
AAGCCGCCTCTTCGAAGATGTCGAA
LOC_Os02g34680
Os.11873.1.S1_at--809--7671Chr02:20798138..20798162 (25 bp)
GGGTTACACAGAGCCATACCAACCT
LOC_Os02g34680
Os.11873.1.S1_at--712--2631Chr02:20798158..20798182 (25 bp)
AACCTCCTGTTAGTGTTGTCGAAGA
LOC_Os02g34680
Os.11873.1.S1_at--979--10811Chr02:20798173..20798197 (25 bp)
TTGTCGAAGAGCACCAGTGGCCGAG
LOC_Os02g34680
Os.11873.1.S1_at--19--5911Chr02:20798317..20798341 (25 bp)
GAGCTGCTCAGATCAGTCGTTTTTT
LOC_Os02g34680
Os.11873.1.S1_at--692--6811Chr02:20798335..20798359 (25 bp)
GTTTTTTCATCCAGTGCTTGTGCAT
LOC_Os02g34680
Os.11873.1.S1_at--361--1011Chr02:20798476..20798500 (25 bp)
AGGTTGGTAATGTTGGGCTGCTCCC
LOC_Os02g34680
Target Sequence 
ATACGTCTGTCCTTATGATGGTTGTGCCAAGGCATACATTCATGAGTACAAACTTAACCTCCATCTGAAGAAAGAGCACC
CTAATCACTACCAGGATGCCGGTGCTCAAGCCGCCTCTTCGAAGATGTCGAAGCGAAGAAGCAAGCCCTCCTTGACGGCC
AAGATGCCACTGCCCAAGGTCCCTAAGCGCAGGGGTTACACAGAGCCATACCAACCTCCTGTTAGTGTTGTCGAAGAGCA
CCAGTGGCCGAGGAATGTGCTGTACGAGGACGATAGCGAGGAGACTGAGGAAGAGGGAGATAATGTTGGGGACGGGGCGA
GGTACAGAGCTGCTAGCAGCGACGACGATGAGGAGACTGAGGACGAAGAATGAGCTGCTCAGATCAGTCGTTTTTTCATC
CAGTGCTTGTGCATATGATTTACAAAATCTTAGCTTTTGGGTTATAGTTTTGCATACATGTACAATATTCAAAATAAGGC
TGGGTAGTTGGTCAGAATTGAGAATTACCCCCCTTCCTTCTGAATTATGCAGGTTGGTAATGTTGGGCTGCTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11873.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis