Browse Element(s) Details


Os.19281.1.S1_at

Description gb:AK067736.1
DB_XREF= gi:32977754
TID=Os.19281.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.19281 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023068L16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013117E08, full insert sequence.
FL= gb:AK067736.1 gb:AK099161.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3469011/11Transmembrane 9 superfamily protein member 3 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34660OsAffx.5954.1.S1_x_at5/112+20785698..20788668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g34660OsAffx.5954.3.S1_x_at3/112+20785698..20788668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g34670OsAffx.5954.5.S1_x_at2/112+20789559..20791046retrotransposon protein, putative, unclassified
LOC_Os02g34680Os.11873.1.S1_at11/112+20795098..20798535Transcription repressor TRM protein, putative, expressed
LOC_Os02g34690Os.19281.1.S1_at11/112+20805472..20809714Transmembrane 9 superfamily protein member 3 precursor, putative, expressed
LOC_Os02g34700NANA2+20810233..20811993pentatricopeptide, putative
LOC_Os02g34710OsAffx.24576.1.S1_x_at11/112+20817610..20818650expressed protein
LOC_Os02g34719NANA2+20823053..20823213NA
LOC_Os02g34730NANA2+20826945..20829550transposon protein, putative, Mariner sub-class, expressed
LOC_Os02g34740NANA2+20830524..20832383retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006944biological_processmembrane fusion
GO:0009524cellular_componentphragmoplast
GO:0016021cellular_componentintegral to membrane
GO:0005486molecular_functiont-SNARE activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19281.1.S1_at--855--9911Chr02:20809058..20809082 (25 bp)
TACTGCCGTCTATGTTTACCTCTAC
LOC_Os02g34690
Os.19281.1.S1_at--41--5611Chr02:20809130..20809154 (25 bp)
GACAAGTTTCTACTTCGGCTACACT
LOC_Os02g34690
Os.19281.1.S1_at--279--2131Chr02:20809150..20809174 (25 bp)
ACACTCTTATGTTCTGCCTAGGTTT
LOC_Os02g34690
Os.19281.1.S1_at--1119--10431Chr02:20809173..20809278 (25 bp)
TTAGGAACACTCTGCGGTGCTGTCG
LOC_Os02g34690
Os.19281.1.S1_at--1015--7851Chr02:20809279..20809303 (25 bp)
GGTATCTTGGATCGACACTGTTTGT
LOC_Os02g34690
Os.19281.1.S1_at--333--331Chr02:20809338..20809362 (25 bp)
AAATTGACCCCGGTTTAGACAGATG
LOC_Os02g34690
Os.19281.1.S1_at--82--10811Chr02:20809375..20809399 (25 bp)
TTGTATGTGTGGCTTGTTCCGTGAA
LOC_Os02g34690
Os.19281.1.S1_at--922--8791Chr02:20809389..20809413 (25 bp)
TGTTCCGTGAAGTGATCAGCCATGT
LOC_Os02g34690
Os.19281.1.S1_at--731--8531Chr02:20809443..20809467 (25 bp)
TGGAGTACAAACGTTCTTCGGCGAC
LOC_Os02g34690
Os.19281.1.S1_at--799--10611Chr02:20809459..20809483 (25 bp)
TTCGGCGACATTGCTGGGATGCCAT
LOC_Os02g34690
Os.19281.1.S1_at--269--5871Chr02:20809613..20809637 (25 bp)
GAGCCTCATATCTGTGTTGCTTCAC
LOC_Os02g34690
Target Sequence 
TACTGCCGTCTATGTTTACCTCTACTCNGTATATTATTACCATGTGAAGACCAAGATGTCAGGATTCTTTCAGACAAGTT
TCTACTTCGGCTACACTCTTATGTTCTGCCTAGGTTTAGGAACACTCTGCGGTGCTGTCGGGTATCTTGGATCGACACTG
TTTGTGAGAAGGATCTACAGGAACATAAAGTGTGACTAAAAATTGACCCCGGTTTAGACAGATGGGGCGAAAAACTTTGT
ATGTGTGGCTTGTTCCGTGAAGTGATCAGCCATGTTTTGGTGGCCAAGAAGCCAGGGCAGTTTATGGAGTACAAACGTTC
TTCGGCGACATTGCTGGGATGCCATGGTTTTTGTTTTCTTGTCCCTTTTGTTCTCTTTGATCCCCCTCTCGGTGCCACAA
TTTTCATGTTCAACTAGCCATATATAGCTGCGATCATAGTTTAGATGTTAGTATATACCAGAGTTGTTATTCTTGAGCCT
CATATCTGTGTTGCTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19281.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis