Browse Element(s) Details


OsAffx.24576.1.S1_x_at

Description tigr:9630.m03307
TID=OsAffx.24576.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3471011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34680Os.11873.1.S1_at11/112+20795098..20798535Transcription repressor TRM protein, putative, expressed
LOC_Os02g34690Os.19281.1.S1_at11/112+20805472..20809714Transmembrane 9 superfamily protein member 3 precursor, putative, expressed
LOC_Os02g34700NANA2+20810233..20811993pentatricopeptide, putative
LOC_Os02g34710OsAffx.24576.1.S1_x_at11/112+20817610..20818650expressed protein
LOC_Os02g34719NANA2+20823053..20823213NA
LOC_Os02g34730NANA2+20826945..20829550transposon protein, putative, Mariner sub-class, expressed
LOC_Os02g34740NANA2+20830524..20832383retrotransposon protein, putative, unclassified
LOC_Os02g34750OsAffx.12351.1.S1_at11/112+20836531..20840346Protein kinase domain containing protein, expressed
LOC_Os02g34760Os.35216.1.S1_at11/112+20840540..20842125retrotransposon protein, putative, unclassified, expressed
LOC_Os02g34760Os.35216.2.S1_x_at11/112+20840540..20842125retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24576.1.S1_x_at--720--1431Chr02:20818154..20818178 (25 bp)
AGAACAGGGTGCTCGTGGAGACGCG
LOC_Os02g34710
OsAffx.24576.1.S1_x_at--78--5631Chr02:20818086..20818110 (25 bp)
GACGCCAAGTTCACCGGGTTCAACG
LOC_Os02g34710
OsAffx.24576.1.S1_x_at--424--9091Chr02:20818049..20818073 (25 bp)
TGCTCTGCGCGACCAGGATGCTCAC
LOC_Os02g34710
OsAffx.24576.1.S1_x_at--742--7571Chr02:20817997..20818021 (25 bp)
GGGCGTGCTCCACTACTGGCCCGAC
LOC_Os02g34710
OsAffx.24576.1.S1_x_at--522--1831Chr02:20817722..20817746 (25 bp)
ACGCGCTGAGGTCCGGGTGCGAGGA
LOC_Os02g34710
OsAffx.24576.1.S1_x_at--198--7791Chr02:20817707..20817731 (25 bp)
GGTGCGAGGACGTCATCGCCCTGAT
LOC_Os02g34710
OsAffx.24576.1.S1_x_at--1039--9611Chr02:20817695..20817719 (25 bp)
TCATCGCCCTGATCGACGACCTATT
LOC_Os02g34710
OsAffx.24576.1.S1_x_at--397--4271Chr02:20817688..20817712 (25 bp)
CCTGATCGACGACCTATTCGACGAG
LOC_Os02g34710
OsAffx.24576.1.S1_x_at--303--8851Chr02:20817686..20817710 (25 bp)
TGATCGACGACCTATTCGACGAGGT
LOC_Os02g34710
OsAffx.24576.1.S1_x_at--328--4091Chr02:20817682..20817706 (25 bp)
CGACGACCTATTCGACGAGGTCGCC
LOC_Os02g34710
OsAffx.24576.1.S1_x_at--309--2751Chr02:20817648..20817672 (25 bp)
AAGAAGCTCCTCGACCTCTGCAGCG
LOC_Os02g34710
Target Sequence 
AGAACAGGGTGCTCGTGGAGACGCGCGCCGAGGCGCTGGCGCTCCGCCTCGCCGAGACCATCCCGCCCGACGCCAAGTTC
ACCGGGTTCAACGGCTTCCGCGGCGTGCTCTGCGCGACCAGGATGCTCACCTCCTTCCTCCTCACGCTCCTCTCCTGGGG
CGTGCTCCACTACTGGCCCGACGCCGGCGGCGCCGGCGGAGCCACCGACTGCGGCGCCTACTTCGGCGCCGCGTTCGCGT
CGGCGCTCGCCCGCGCGCAGCAGCGCGCCGCGGCGGCGGCGGCGGCGGTGTCGCCCTCCGTCGTCGACGCAGGGGGAGGC
GCGATGATGCACGAGTTCCGGCGCGCCAGGGCGGCGGTGGAGCAGGCCAGGGACGCCGTGGACAGGGCCGGCGACGTCGC
GGCGGCGGCGGCGGAGGTCGCCCTGCGCGCCGACGCGCTGAGGTCCGGGTGCGAGGACGTCATCGCCCTGATCGACGACC
TATTCGACGAGGTCGCCGAGGGGAGGAAGAAGCTCCTCGACCTCTGCAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24576.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis