Browse Element(s) Details


Os.11782.1.S1_at

Description gb:AB125307.1
DB_XREF= gi:46917339
GEN=SAPK6
TID=Os.11782.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.11782 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) SAPK6 mRNA for serinethreonine protein kinase SAPK6, complete cds.
PROD=serinethreonine protein kinase SAPK6
FL= gb:AK067395.1 gb:AB125307.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3460011/11Serine/threonine-protein kinase SAPK7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34560Os.21046.1.S1_at11/112+20712022..20716037Neutral/alkaline invertase, putative, expressed
LOC_Os02g34570Os.53185.1.S1_at11/112+20722469..207257703' exoribonuclease family, domain 2 containing protein, expressed
LOC_Os02g34570Os.3282.2.S1_x_at1/112+20722469..207257703' exoribonuclease family, domain 2 containing protein, expressed
LOC_Os02g34580Os.49050.1.S1_at11/112+20728208..20731448Ammonium transporter 2, putative, expressed
LOC_Os02g34590Os.11567.1.S1_a_at11/112+20732046..20735137transposon protein, putative, unclassified, expressed
LOC_Os02g34590Os.11567.1.S2_a_at11/112+20732046..20735137transposon protein, putative, unclassified, expressed
LOC_Os02g34600Os.11782.1.S1_at11/112+20740496..20745452Serine/threonine-protein kinase SAPK7, putative, expressed
LOC_Os02g34600Os.54455.1.S1_at1/112+20740496..20745452Serine/threonine-protein kinase SAPK7, putative, expressed
LOC_Os02g34610NANA2+20747040..20747552expressed protein
LOC_Os02g34620NANA2+20752385..20753121hypothetical protein
LOC_Os02g34630Os.14985.1.S1_at11/112+20757531..20761714Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g34640OsAffx.24574.1.S1_at11/112+20770379..20771216expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11782.1.S1_at--401--1471Chr02:20741072..20741096 (25 bp)
AGAAGGACAACAGTGCCCGTACATT
LOC_Os02g34600
Os.11782.1.S1_at--1139--7011Chr02:20741054..20741078 (25 bp)
GTACATTCTCGGATCAGACCGTCGA
LOC_Os02g34600
Os.11782.1.S1_at--268--7231Chr02:20740984..20741008 (25 bp)
GTCGACTCCAGTGGCCGGTTTCGGT
LOC_Os02g34600
Os.11782.1.S1_at--1042--5011Chr02:20740852..20740876 (25 bp)
GCAGGTGAAGCAAGCCCATGCCAGC
LOC_Os02g34600
Os.11782.1.S1_at--920--4331Chr02:20740837..20740861 (25 bp)
CCATGCCAGCTGTGACTTGCAGAAG
LOC_Os02g34600
Os.11782.1.S1_at--11--1231Chr02:20740796..20740820 (25 bp)
AGTTCAAGCTTTGCTGTTGCCGGCA
LOC_Os02g34600
Os.11782.1.S1_at--205--1051Chr02:20740769..20740793 (25 bp)
AGGGTGTTTTTGTGCATGTTTGTAC
LOC_Os02g34600
Os.11782.1.S1_at--164--1311Chr02:20740720..20740744 (25 bp)
AGATGTCGCATCCTTTTCGTTATTA
LOC_Os02g34600
Os.11782.1.S1_at--152--10491Chr02:20740678..20740702 (25 bp)
TTAACTTTCTGTTGTTGCCTTGGGT
LOC_Os02g34600
Os.11782.1.S1_at--642--9891Chr02:20740591..20740615 (25 bp)
TACTACCAAATAGGCTCTCCAGTGC
LOC_Os02g34600
Os.11782.1.S1_at--329--4811Chr02:20740578..20740602 (25 bp)
GCTCTCCAGTGCCTTTGTAATGGTT
LOC_Os02g34600
Target Sequence 
AGAAGGACAACAGTGCCCGTACATTCTCGGATCAGACCGTCGACGAGATCATGAAGATTGTACAAGAGGCAAAGACACCA
CCTCCATCGTCGACTCCAGTGGCCGGTTTCGGTTGGACCGAGGAAGAAGAGCAGGAGGACGGTAAGAATCCCGACGACGA
CGAGGGAGACAGGGATGAGGAGGAGGGCGAGGAAGGCGATAGCGAGGACGAGTACACCAAGCAGGTGAAGCAAGCCCATG
CCAGCTGTGACTTGCAGAAGAGCTGATAAGATGTTGAGTTCAAGCTTTGCTGTTGCCGGCAAGAGGGTGTTTTTGTGCAT
GTTTGTACTTTGTGGTAGTTGTGGGGGTGATGAGATGTCGCATCCTTTTCGTTATTAGTTTGTCTTTGTAGCTTTTAACT
TTCTGTTGTTGCCTTGGGTCTTCCTTTTCTTTTATCCTGTTCTTTTTTTTTATCTTGTGATATGTTAACACCGTAAATTA
TTACTACCAAATAGGCTCTCCAGTGCCTTTGTAATGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11782.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis