Browse Element(s) Details


Os.53185.1.S1_at

Description gb:AK071257.1
DB_XREF= gi:32981280
TID=Os.53185.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53185 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023083L07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083L07, full insert sequence.
FL= gb:AK071257.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3457011/113' exoribonuclease family, domain 2 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34540Os.55551.1.S1_at11/112+20697850..20699039TPR Domain containing protein, expressed
LOC_Os02g34550OsAffx.17848.2.S1_at10/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.2.S1_x_at10/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.4.S1_x_at6/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.1.S1_at5/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.3.S1_x_at4/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.5.S1_x_at4/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550Os.54363.1.S1_at3/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.1.S1_x_at3/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.4.S1_at2/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34560Os.21046.1.S1_at11/112+20712022..20716037Neutral/alkaline invertase, putative, expressed
LOC_Os02g34570Os.53185.1.S1_at11/112+20722469..207257703' exoribonuclease family, domain 2 containing protein, expressed
LOC_Os02g34570Os.3282.2.S1_x_at1/112+20722469..207257703' exoribonuclease family, domain 2 containing protein, expressed
LOC_Os02g34580Os.49050.1.S1_at11/112+20728208..20731448Ammonium transporter 2, putative, expressed
LOC_Os02g34590Os.11567.1.S1_a_at11/112+20732046..20735137transposon protein, putative, unclassified, expressed
LOC_Os02g34590Os.11567.1.S2_a_at11/112+20732046..20735137transposon protein, putative, unclassified, expressed
LOC_Os02g34600Os.11782.1.S1_at11/112+20740496..20745452Serine/threonine-protein kinase SAPK7, putative, expressed
LOC_Os02g34600Os.54455.1.S1_at1/112+20740496..20745452Serine/threonine-protein kinase SAPK7, putative, expressed
LOC_Os02g34610NANA2+20747040..20747552expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0000175molecular_function3'-5'-exoribonuclease activity
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53185.1.S1_at--1009--5991Chr02:20723009..20723033 (25 bp)
GAGACGCAGGAAGCTATATCGCCAA
LOC_Os02g34570
Os.53185.1.S1_at--235--3511Chr02:20722917..20722939 (23 bp)
CATGTAACTTATAGGCCTGTCAGCA
LOC_Os02g34570
Os.53185.1.S1_at--631--7891Chr02:20722774..20722798 (25 bp)
GGTTGGCAAAATTCCGTTGTTCTCT
LOC_Os02g34570
Os.53185.1.S1_at--136--10671Chr02:20722763..20722787 (25 bp)
TTCCGTTGTTCTCTTGATGGTGTAC
LOC_Os02g34570
Os.53185.1.S1_at--471--7871Chr02:20722685..20722709 (25 bp)
GGTTTCTATCATTTTTAGTTCCTCT
LOC_Os02g34570
Os.53185.1.S1_at--1152--2631Chr02:20722648..20722672 (25 bp)
AAGCCTTCACTACCACCATTTGTTA
LOC_Os02g34570
Os.53185.1.S1_at--1053--6591Chr02:20722616..20722640 (25 bp)
GATTGTTTCTGCAGTCAATGTCTGA
LOC_Os02g34570
Os.53185.1.S1_at--901--8971Chr02:20722594..20722618 (25 bp)
TGAACATCTCTGTAACACCTAGCCA
LOC_Os02g34570
Os.53185.1.S1_at--227--5091Chr02:20722536..20722560 (25 bp)
GCACCATGAGTTGAGTTTCTTCTTC
LOC_Os02g34570
Os.53185.1.S1_at--855--9731Chr02:20722499..20722523 (25 bp)
TAATTGTGCGCCTTCGTTGTGACGA
LOC_Os02g34570
Os.53185.1.S1_at--592--9391Chr02:20722486..20722510 (25 bp)
TCGTTGTGACGAATGCTAGCCGCAA
LOC_Os02g34570
Target Sequence 
GAGACGCAGGAAGCTATATCGCCAAAGAGTCTAAAAGACGCTGTCAAGCCAAAACACAAAATAAAGAAAAAACAACACAG
CAAGAGTTANATTTCATGTAACTTATAGGCCTGTCAGCAGTGTTAGATAGCGCAATGTTTGTGGGCATGGTTGGCAAAAT
TCCGTTGTTCTCTTGATGGTGTACATGCTAGATTATACAGCACGATGTATTTTCATGAGATTCAAATCAACGTGGAAGGT
TTCTATCATTTTTAGTTCCTCTATTTTTTTGTGGAAGCCTTCACTACCACCATTTGTTATGATGTTGATTGTTTCTGCAG
TCAATGTCTGAACATCTCTGTAACACCTAGCCAAGNNNTCCNGACTGAAAAGATCCCTTCNCCATAGCACCATGAGTTGA
GTTTCTTCTTCTGATGTTTTGTGTAATTGTGCGCCTTCGTTGTGACGAATGCTAGCCGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53185.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis