Browse Element(s) Details


OsAffx.19815.1.S1_at

Description tigr:9640.m02381
TID=OsAffx.19815.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2498011/11hypothetical protein
LOC_Os06g260001/11hypothetical protein
LOC_Os04g119101/11Transposable element protein, putative, MuDR
LOC_Os09g087701/11hypothetical protein
LOC_Os04g140401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g373101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24920OsAffx.15648.1.S1_at1/1112+14307348..14311873Transposable element protein, putative, Retrotrans_gag
LOC_Os12g24920OsAffx.5782.1.S1_at1/1112+14307348..14311873Transposable element protein, putative, Retrotrans_gag
LOC_Os12g24930NANA12+14316298..14318104retrotransposon protein, putative, unclassified
LOC_Os12g24940OsAffx.31869.1.S1_at5/1112+14321142..14321591retrotransposon protein, putative, unclassified
LOC_Os12g24950NANA12+14322247..14324951retrotransposon protein, putative, unclassified
LOC_Os12g24960NANA12+14325697..14328199hypothetical protein
LOC_Os12g24970NANA12+14331141..14332552hypothetical protein
LOC_Os12g24980OsAffx.19815.1.S1_at11/1112+14334114..14338572hypothetical protein
LOC_Os12g24980OsAffx.1755.1.S1_x_at3/1112+14334114..14338572hypothetical protein
LOC_Os12g24980OsAffx.1755.1.S1_at2/1112+14334114..14338572hypothetical protein
LOC_Os12g24990NANA12+14339147..14344545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g25000NANA12+14351115..14353502transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g25010Os.46314.3.S1_at1/1112+14353797..14354111transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g25020OsAffx.23366.2.S1_s_at1/1112+14356070..14357726transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g25030NANA12+14357916..14359631hypothetical protein
LOC_Os12g25040Os.23346.1.A1_at5/1112+14363510..14371840retrotransposon protein, putative, unclassified
LOC_Os12g25040Os.49320.1.S1_s_at5/1112+14363510..14371840retrotransposon protein, putative, unclassified
LOC_Os12g25040OsAffx.940.1.S1_x_at2/1112+14363510..14371840retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19815.1.S1_at--166--2811Chr12:14337786..14337810 (25 bp)
AAGATAACCGGTATGGTCTTCGCCA
LOC_Os12g24980
OsAffx.19815.1.S1_at--1061--9171Chr12:14337726..14337750 (25 bp)
TGCCGGTTTGCGAGGAGCCATAGAT
LOC_Os12g24980
OsAffx.19815.1.S1_at--1148--2431Chr12:14337683..14337707 (25 bp)
AAAAGGTCTGGGAACTAGCTAGCGA
LOC_Os12g24980
OsAffx.19815.1.S1_at--25--9371Chr12:14337654..14337678 (25 bp)
TCGAAAGCTCTTGACCGCGGATGGG
LOC_Os12g24980
OsAffx.19815.1.S1_at--831--99129Chr12:13999462..13999486 (25 bp)
TACTGTTGAGAGAACCACGCCTTTC
NONE
OsAffx.19815.1.S1_at--1111--5757Chr04:16016640..16016664 (25 bp)
GACGTGACGCAGTTGTCTATTCGAC
NONE
OsAffx.19815.1.S1_at--207--3471Chr12:14336331..14336354 (24 bp)
CAGGGTTTCTGCTTGTATCGGCTAA
LOC_Os12g24980
OsAffx.19815.1.S1_at--925--104314Chr09:20195126..20195570 (25 bp)
TTAGACATCTACCACCCTTAGAATC
NONE
OsAffx.19815.1.S1_at--40--7411Chr12:14334479..14334503 (25 bp)
GTGTTGACATCGAATCGGGCCACCA
LOC_Os12g24980
OsAffx.19815.1.S1_at--979--7551Chr12:14334463..14334487 (25 bp)
GGGCCACCACACATTGAGCACGTTA
LOC_Os12g24980
OsAffx.19815.1.S1_at--191--1071Chr12:14334170..14334390 (25 bp)
AGGGATCCTGTCAAGATTTGGCCCC
LOC_Os12g24980
Target Sequence 
AAGATAACCGGTATGGTCTTCGCCAACCTTACACGGGTCGGGACCGATGGTCGAAATGAGTGCCGGTTTGCGAGGAGCCA
TAGATGGAAAGAACGGAAAAATCAAAAGGTCTGGGAACTAGCTAGCGAGACGTCGAAAGCTCTTGACCGCGGATGGGCAC
AACGGGCGGCTGGGAAGATGGCGAAAATAATCAAGGGTAAAAGTAAAAGTGAAAACTGGGGGGAGGGGGCTACTGTTGAG
AGAACCACGCCTTTCGACGTGACGCAGTTGTCTATTCGACAACAGGGTTTCTGCTTGTATCGGCTAAATCGTGTTGCTAG
ATTAGATTTTCTTAGACATCTACCACCCTTAGAATCAGCCAAAGGCTTGATGATTTGCCAAAAAATATGTGTTGACATCG
AATCGGGCCACCACACATTGAGCACGTTATGTGCAATCCGCAACGGCACATGGAGACACACCACCGCAGTGGAGGTAGAT
GCCATAAAACGAACAAATGGAAGGGATCCTGTCAAGATTTGGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19815.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis