Browse Element(s) Details


Os.23346.1.A1_at

Description gb:CA759309
DB_XREF= gi:25803348
DB_XREF=BR060006A10B09.ab1
CLONE=BR060006A10B09.ab1
TID=Os.23346.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23346 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g250405/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24980OsAffx.19815.1.S1_at11/1112+14334114..14338572hypothetical protein
LOC_Os12g24980OsAffx.1755.1.S1_x_at3/1112+14334114..14338572hypothetical protein
LOC_Os12g24980OsAffx.1755.1.S1_at2/1112+14334114..14338572hypothetical protein
LOC_Os12g24990NANA12+14339147..14344545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g25000NANA12+14351115..14353502transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g25010Os.46314.3.S1_at1/1112+14353797..14354111transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g25020OsAffx.23366.2.S1_s_at1/1112+14356070..14357726transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g25030NANA12+14357916..14359631hypothetical protein
LOC_Os12g25040Os.23346.1.A1_at5/1112+14363510..14371840retrotransposon protein, putative, unclassified
LOC_Os12g25040Os.49320.1.S1_s_at5/1112+14363510..14371840retrotransposon protein, putative, unclassified
LOC_Os12g25040OsAffx.940.1.S1_x_at2/1112+14363510..14371840retrotransposon protein, putative, unclassified
LOC_Os12g25050Os.52238.1.S1_at1/1112+14376517..14381704retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23346.1.A1_at--1119--4852Chr10:11818348..11818367 (20 bp)
GCTAGCTAAGTCATGTTTGTTGTTT
NONE
Os.23346.1.A1_at--514--10792Chr12:14364134..14364253 (25 bp)
TTGTTGTTTACCTTTCACGCACATT
LOC_Os12g25040
Os.23346.1.A1_at--143--6651NONE
GTTGTTTACCTTTCACGCACATTTC
NONE
Os.23346.1.A1_at--764--4291Chr12:14364128..14364148 (21 bp)
CCTTTCACGCACATTTCCTTTAAAT
LOC_Os12g25040
Os.23346.1.A1_at--647--9652Chr12:14363862..14363888 (24 bp)
TCAGAGAGTGATGACATGTATTTAC
LOC_Os12g25040
Os.23346.1.A1_at--1029--6791Chr02:16342202..16342226 (25 bp)
GTTATTGTGAGTTACATTTTTCTTT
NONE
Os.23346.1.A1_at--64--10332Chr12:14363698..14363722 (25 bp)
TTTCTTTTATCTTTTGCAATTATAT
LOC_Os12g25040
Os.23346.1.A1_at--208--7433Chr12:14363656..14363680 (25 bp)
GTGTTTTGTGATTTCTTATCTTCCT
LOC_Os12g25040
Os.23346.1.A1_at--718--6531NONE
GATTTCTTATCTTCCTAATGCTAGG
NONE
Os.23346.1.A1_at--836--10411NONE
TTATCTTCCTAATGCTAGGCTGAGA
NONE
Os.23346.1.A1_at--227--3711Chr02:16342113..16342137 (25 bp)
CTAGGCTGAGATGGAAGTTCATTGA
NONE
Target Sequence 
GCTAGCTAAGTCATGTTTGTTGTTTACCTTTCACGCACATTTCCTTTAAATATGCAAATGAAAAAACTGTCAGAGAGTGA
TGACATGTATTTACAAACAATTTGCATTTAATTTCAGAAGCAAACTAAGTATAAGGATGCTCCACCCCCTGCATTTGATC
TTTTCAAGATGTGCCATTGCAACAGCAATACGAGTTTTAATGAGCCTGTAAAGAATGTTATTGTGAGTTACATTTTTCTT
TTATCTTTTGCAATTATATATTAATGCGAATAAAATGTGTTTTGTGATTTCTTATCTTCCTAATGCTAGGCTGAGATGGA
AGTTCATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23346.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis