Browse Element(s) Details


Os.8814.1.S1_at

Description gb:AK073992.1
DB_XREF= gi:32984015
TID=Os.8814.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8814 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033072G13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033072G13, full insert sequence.
FL= gb:AK073992.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1188011/11Vacuolar assembly protein VPS41 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11830Os.53807.1.S2_at11/114+6470913..6475626PCF2 DNA binding protein, putative, expressed
LOC_Os04g11830Os.53807.1.S1_at11/114+6470913..6475626PCF2 DNA binding protein, putative, expressed
LOC_Os04g11840NANA4+6479161..6479631hypothetical protein
LOC_Os04g11850Os.51062.1.S1_at5/114+6481594..6483296hypothetical protein
LOC_Os04g11850Os.51062.1.S1_x_at4/114+6481594..6483296hypothetical protein
LOC_Os04g11850OsAffx.27771.2.S1_s_at4/114+6481594..6483296hypothetical protein
LOC_Os04g11850OsAffx.27771.1.S1_x_at3/114+6481594..6483296hypothetical protein
LOC_Os04g11850Os.53560.1.S1_at2/114+6481594..6483296hypothetical protein
LOC_Os04g11850Os.36875.1.A1_at1/114+6481594..6483296hypothetical protein
LOC_Os04g11860OsAffx.13781.1.S1_at11/114+6484277..6485222hypothetical protein
LOC_Os04g11870NANA4+6490557..6491107hypothetical protein
LOC_Os04g11880Os.8814.1.S1_at11/114+6491586..6498899Vacuolar assembly protein VPS41 homolog, putative, expressed
LOC_Os04g11890Os.54963.1.S1_at11/114+6500544..6502281F-box domain containing protein, expressed
LOC_Os04g11900OsAffx.13933.1.S1_x_at1/114+6504942..6506369hypothetical protein
LOC_Os04g11910OsAffx.28472.1.S1_x_at11/114+6508556..6515588Transposable element protein, putative, MuDR
LOC_Os04g11910OsAffx.17848.5.S1_x_at4/114+6508556..6515588Transposable element protein, putative, MuDR
LOC_Os04g11910OsAffx.17848.1.S1_x_at2/114+6508556..6515588Transposable element protein, putative, MuDR
LOC_Os04g11910OsAffx.17848.3.S1_x_at2/114+6508556..6515588Transposable element protein, putative, MuDR
LOC_Os04g11910OsAffx.19815.1.S1_at1/114+6508556..6515588Transposable element protein, putative, MuDR
LOC_Os04g11910OsAffx.17848.2.S1_x_at1/114+6508556..6515588Transposable element protein, putative, MuDR
LOC_Os04g11920NANA4+6520383..6523255retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8814.1.S1_at--850--3771Chr04:6498302..6498326 (25 bp)
CTCGGCGTGGAGTCTACATGGCTAG
LOC_Os04g11880
Os.8814.1.S1_at--410--4811Chr04:6498436..6498460 (25 bp)
GCTCGGTGTTGCTTGTGCTTTGATC
LOC_Os04g11880
Os.8814.1.S1_at--253--7331Chr04:6498450..6498474 (25 bp)
GTGCTTTGATCCTTTGTCGATTCAG
LOC_Os04g11880
Os.8814.1.S1_at--841--951Chr04:6498473..6498497 (25 bp)
AGGACATCTCTGTCATCGTGTTCTA
LOC_Os04g11880
Os.8814.1.S1_at--364--251Chr04:6498510..6498534 (25 bp)
ATATCACACGTCTTGCCTCGAAGGC
LOC_Os04g11880
Os.8814.1.S1_at--340--331Chr04:6498587..6498611 (25 bp)
ATGAAGGTACCCCATCAGGCGAGTC
LOC_Os04g11880
Os.8814.1.S1_at--683--4071Chr04:6498606..6498630 (25 bp)
CGAGTCTCGAATGCGCTGTGTATTG
LOC_Os04g11880
Os.8814.1.S1_at--441--6871Chr04:6498625..6498649 (25 bp)
GTATTGTGTACTACAGCTGCTGCAT
LOC_Os04g11880
Os.8814.1.S1_at--361--10291Chr04:6498659..6498683 (25 bp)
TTTCGTAACGAGTAGTCCATATCCA
LOC_Os04g11880
Os.8814.1.S1_at--1046--3131Chr04:6498712..6498736 (25 bp)
AATTAGCGTGTTATTCTGGCGTGAT
LOC_Os04g11880
Os.8814.1.S1_at--272--6111Chr04:6498861..6498885 (25 bp)
GAGTGCCAGACCATCGGAAGTTCAT
LOC_Os04g11880
Target Sequence 
CTCGGCGTGGAGTCTACATGGCTAGTATGGACGAGGAGGTGACAGGAACTAGGGTTGCTGAAGGATCTTCACGAGCAAAC
GAGAGATCATCAAGTTTACGAGCTTTAGAGATCAAATCCAGAACAAGGTGTGGTGCTCGGTGTTGCTTGTGCTTTGATCC
TTTGTCGATTCAGGACATCTCTGTCATCGTGTTCTACTGCTGCCACGCATATCACACGTCTTGCCTCGAAGGCGGGTTGG
ACTTGATGAAATCGAACAGTAGTACTCAGGACAGCGACGAGGATGATGAAGGTACCCCATCAGGCGAGTCTCGAATGCGC
TGTGTATTGTGTACTACAGCTGCTGCATAATAACTTATTTCGTAACGAGTAGTCCATATCCANGTGTTGTGTTGTAAGTT
TGAGCCTTGTAATTAGCGTGTTATTCTGGCGTGATAAATATGTACAATAGGTTAATTCTTTGGGGGGAAGCCATATCCTC
AGCAAGAGGAGTTTNGTGTAGATTTGACAGATATGTNGATTACTTGANCNAAGNTGTACGGCATNTTTCTTAATGCCACG
AGTGCCAGACCATCGGAAGTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8814.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis