Browse Element(s) Details


OsAffx.12764.2.S1_x_at

Description tigr:9631.m00665
TID=OsAffx.12764.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative glucosyl transferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0735011/11glycosyl transferase family 2 protein, putative, expressed
LOC_Os09g267704/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07260OsAffx.12763.1.S1_at11/113+3684278..3685888TPR Domain containing protein
LOC_Os03g07270Os.48500.1.A1_s_at11/113+3686298..3687608expressed protein
LOC_Os03g07270Os.38457.1.S1_s_at11/113+3686298..3687608expressed protein
LOC_Os03g07270OsAffx.3864.1.S1_x_at1/113+3686298..3687608expressed protein
LOC_Os03g07290Os.14697.1.S1_at11/113+3690248..3692364ribosomal protein L32 containing protein, expressed
LOC_Os03g07310Os.52078.1.S1_at11/113+3692603..3700216Axi 1 protein, putative, expressed
LOC_Os03g07310Os.52078.2.S1_at11/113+3692603..3700216Axi 1 protein, putative, expressed
LOC_Os03g07300Os.12622.1.S1_at10/113+3693033..3696507Ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed
LOC_Os03g07320NANA3+3702087..3702740transposon protein, putative, Pong sub-class
LOC_Os03g07330OsAffx.3162.1.S1_at11/113+3703740..3705272pentatricopeptide, putative
LOC_Os03g07340Os.12963.1.S1_at11/113+3706875..370803350S ribosomal protein L18, chloroplast precursor, putative, expressed
LOC_Os03g07350OsAffx.12764.2.S1_at11/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07350OsAffx.12764.2.S1_x_at11/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07350OsAffx.12764.1.S1_at1/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07360Os.11987.1.S1_at11/113+3717979..3720806Dof domain, zinc finger family protein, expressed
LOC_Os03g07370Os.10433.1.S1_at11/113+3723554..3725197HNH endonuclease domain-containing protein, putative, expressed
LOC_Os03g07380Os.47357.1.A1_at11/113+3727045..3729679expressed protein
LOC_Os03g07380Os.46536.2.S1_x_at6/113+3727045..3729679expressed protein
LOC_Os03g07390NANA3+3732447..3733847hypothetical protein
LOC_Os03g07400NANA3+3736654..3737232expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009294biological_processDNA mediated transformation
GO:0009618biological_processresponse to pathogenic bacteria
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12764.2.S1_x_at--1142--432Chr09:16263579..16263603 (25 bp)
ATCTACTCTACAGCTTTTTCTTCGT
LOC_Os09g26770
OsAffx.12764.2.S1_x_at--1076--8791Chr03:3711917..3711941 (25 bp)
TGTTCTACTGTGTTGTGATTCCGCT
LOC_Os03g07350
OsAffx.12764.2.S1_x_at--1058--8711Chr03:3711941..3711965 (25 bp)
TGTCTGTCATGGTCCCTGAAGTCAG
LOC_Os03g07350
OsAffx.12764.2.S1_x_at--1116--5271Chr03:3712157..3712181 (25 bp)
GAATGTCATGGCCATGCACCGGATG
LOC_Os03g07350
OsAffx.12764.2.S1_x_at--407--9791Chr03:3712192..3712216 (25 bp)
TAACCGGCTTGCTCGAGACCATGAA
LOC_Os03g07350
OsAffx.12764.2.S1_x_at--654--2852Chr09:16263992..16264016 (25 bp)
AAGTCCCTCTTCTTGAACCATTGAA
LOC_Os09g26770
OsAffx.12764.2.S1_x_at--828--6712Chr09:16264174..16264198 (25 bp)
GTTCTACCTCCTGGTATGCGCGTCT
LOC_Os09g26770
OsAffx.12764.2.S1_x_at--406--611Chr03:3712475..3712499 (25 bp)
ATGCGCGTCTTACGATTTGGTGCTC
LOC_Os03g07350
OsAffx.12764.2.S1_x_at--24--2732Chr09:16264220..16264244 (25 bp)
AAGCACTACTACCTGTACATCTACC
LOC_Os09g26770
OsAffx.12764.2.S1_x_at--676--9871Chr03:3712521..3712545 (25 bp)
TACATCTACCTCCAGGCATTTGCTT
LOC_Os03g07350
OsAffx.12764.2.S1_x_at--838--4951Chr03:3712536..3712560 (25 bp)
GCATTTGCTTTCATTGCTCTGGGAT
LOC_Os03g07350
Target Sequence 
ATCTACTCTACAGCTTTTTCTTCGTAAGGAGGGTCGTCGCTCCCATCCTGACCTTCCTGTTCTACTGTGTTGTGATTCCG
CTGTCTGTCATGGTCCCTGAAGTCAGCATTCCTGTCTGGGGGATGGTCTACATTCCCACTGCCATTACCATCATGAACGC
CATCAGAAATCCTGGGTCCATCCATCTGATGCCTTTTTGGATTCTATTCGAGAATGTCATGGCCATGCACCGGATGCGTG
CAGCTCTAACCGGCTTGCTCGAGACCATGAATGTCAATCAGTGGGTGGTTACTGAAAAGGTTGGTGATCATGTGAAGGAC
AAGCTTGAAGTCCCTCTTCTTGAACCATTGAAGCCAACAGACTGCGTCGAGAGGATTTACATTCCTGAGCTTATGGTCGC
GTTCTACCTCCTGGTATGCGCGTCTTACGATTTGGTGCTCGGGGCCAAGCACTACTACCTGTACATCTACCTCCAGGCAT
TTGCTTTCATTGCTCTGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12764.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis