Browse Element(s) Details


Os.9257.1.S1_at

Description gb:AU057487
DB_XREF= gi:4716371
DB_XREF=AU057487
CLONE=S21480_2Z
TID=Os.9257.1
CNT=22
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9257 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_178383.1 (A.thaliana) putative protein kinase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0743011/11serine/threonine-protein kinase NAK, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07370Os.10433.1.S1_at11/113+3723554..3725197HNH endonuclease domain-containing protein, putative, expressed
LOC_Os03g07380Os.47357.1.A1_at11/113+3727045..3729679expressed protein
LOC_Os03g07380Os.46536.2.S1_x_at6/113+3727045..3729679expressed protein
LOC_Os03g07390NANA3+3732447..3733847hypothetical protein
LOC_Os03g07400NANA3+3736654..3737232expressed protein
LOC_Os03g07410Os.52495.1.S1_at11/113+3739635..3741424NA
LOC_Os03g07410Os.37090.1.S1_x_at10/113+3739635..3741424NA
LOC_Os03g07410Os.38268.2.S1_s_at1/113+3739635..3741424NA
LOC_Os03g07420Os.6131.1.S1_at11/113+3742938..3746341predicted 3-dehydroquinate synthase family protein, expressed
LOC_Os03g07430Os.9257.1.S1_at11/113+3746799..3750660serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g07440NANA3+3755892..3756656Vip1 protein, putative, expressed
LOC_Os03g07450OsAffx.12765.1.S1_x_at11/113+3763394..3766044DNA-binding protein, putative, expressed
LOC_Os03g07450OsAffx.18415.1.S1_x_at4/113+3763394..3766044DNA-binding protein, putative, expressed
LOC_Os03g07460OsAffx.25007.2.S1_at11/113+3766797..3767501hypothetical protein
LOC_Os03g07460OsAffx.25007.2.S1_s_at11/113+3766797..3767501hypothetical protein
LOC_Os03g07460OsAffx.25007.1.S1_at6/113+3766797..3767501hypothetical protein
LOC_Os03g07470OsAffx.3164.1.S1_at11/113+3773693..3774661Glutaredoxin family protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9257.1.S1_at--641--5031Chr03:3747360..3747384 (25 bp)
GCAGAACCTAGTTGACTGGGCCAAA
LOC_Os03g07430
Os.9257.1.S1_at--810--2211Chr03:3747322..3747346 (25 bp)
ACAAGCGTAGGCTGTACCGTGTCAT
LOC_Os03g07430
Os.9257.1.S1_at--620--9151Chr03:3747249..3747273 (25 bp)
TGCGAACATCGCCTTGCAATGCATC
LOC_Os03g07430
Os.9257.1.S1_at--975--2991Chr03:3747221..3747245 (25 bp)
AATGATGCCAAGATGCGCCCGCGGA
LOC_Os03g07430
Os.9257.1.S1_at--1080--4191Chr03:3747204..3747228 (25 bp)
CCCGCGGATGTCTGAGGTCTTGGAA
LOC_Os03g07430
Os.9257.1.S1_at--58--5951Chr03:3747173..3747197 (25 bp)
GAGCAGCTGCAGGACTCCAAATATA
LOC_Os03g07430
Os.9257.1.S1_at--628--271Chr03:3747148..3747172 (25 bp)
ATATGGCTTCACCACAGGTTGACAT
LOC_Os03g07430
Os.9257.1.S1_at--786--2851Chr03:3747098..3747122 (25 bp)
AAGTCGCCGATGAGAATCCAGCCAT
LOC_Os03g07430
Os.9257.1.S1_at--1135--1531Chr03:3747048..3747072 (25 bp)
AGCATCCCCATTGCCAGGATATAGG
LOC_Os03g07430
Os.9257.1.S1_at--1091--5351Chr03:3746993..3747017 (25 bp)
GAAGAGGTCTTTTATCTGCACGGCT
LOC_Os03g07430
Os.9257.1.S1_at--528--10591Chr03:3746928..3746952 (25 bp)
TTCTCGAGGAACTTTCTGTTTCTAG
LOC_Os03g07430
Target Sequence 
GCAGAACCTAGTTGACTGGGCCAAACCCCACTTGGGCGACAAGCGTAGGCTGTACCGTGTCATGGATACAAAGCTGGGAG
GCCAATATCCGAAGAAAGGCGCCCACGCNNATTGCGAACATCGCCTTGCAATGCATCTGCAATGATGCCAAGATGCGCCC
GCGGATGTCTGAGGTCTTGGAAGAGCTGGAGCAGCTGCAGGACTCCAAATATAATATGGCTTCACCACAGGTTGACATCC
GGAGAACCTCAAACGCCGTCCCTAAGTCGCCGATGAGAATCCAGCCATCGCCACGGCGCTCACTTGGAGCAGCAGCATCC
CCATTGCCAGGATATAGGACTGCCAAAGTGCACTAGAAGTGCAACATAGAAGAGGTCTTTTATCTGCACGGCTGTATAGT
TTGTTATGTAAGCAGTGTTTTTNTGTCCTTTTTTTCTCGAGGAACTTTCTGTTTCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis