Browse Element(s) Details


OsAffx.3164.1.S1_at

Description tigr:9631.m00678
TID=OsAffx.3164.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0747011/11Glutaredoxin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07430Os.9257.1.S1_at11/113+3746799..3750660serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g07440NANA3+3755892..3756656Vip1 protein, putative, expressed
LOC_Os03g07450OsAffx.12765.1.S1_x_at11/113+3763394..3766044DNA-binding protein, putative, expressed
LOC_Os03g07450OsAffx.18415.1.S1_x_at4/113+3763394..3766044DNA-binding protein, putative, expressed
LOC_Os03g07460OsAffx.25007.2.S1_at11/113+3766797..3767501hypothetical protein
LOC_Os03g07460OsAffx.25007.2.S1_s_at11/113+3766797..3767501hypothetical protein
LOC_Os03g07460OsAffx.25007.1.S1_at6/113+3766797..3767501hypothetical protein
LOC_Os03g07470OsAffx.3164.1.S1_at11/113+3773693..3774661Glutaredoxin family protein
LOC_Os03g07480Os.4704.1.S1_at11/113+3776807..3783243sucrose transporter, putative, expressed
LOC_Os03g07490NANA3+3786704..3786910hypothetical protein
LOC_Os03g07500Os.45967.1.A1_at1/113+3789494..3789889hypothetical protein
LOC_Os03g07510OsAffx.25008.1.S1_s_at11/113+3793714..3795941hypothetical protein
LOC_Os03g07510Os.52845.1.S1_at6/113+3793714..3795941hypothetical protein
LOC_Os03g07510OsAffx.1396.1.S1_x_at1/113+3793714..3795941hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005489molecular_functionelectron transporter activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3164.1.S1_at--299--9151Chr03:3774061..3774085 (25 bp)
TGCGTCGCGCAAGGTCACGCCGCTG
LOC_Os03g07470
OsAffx.3164.1.S1_at--433--7251Chr03:3774123..3774147 (25 bp)
GTCCGCGCAAGGCCGTGCTCTACTT
LOC_Os03g07470
OsAffx.3164.1.S1_at--526--4571Chr03:3774168..3774192 (25 bp)
GCGCGACGCACGAGGACTGCTGCCT
LOC_Os03g07470
OsAffx.3164.1.S1_at--1112--5871Chr03:3774233..3774257 (25 bp)
GAGCGCGACGTGTCGATGCACCGGG
LOC_Os03g07470
OsAffx.3164.1.S1_at--998--4171Chr03:3774342..3774366 (25 bp)
CCCTGCCGAGCCTGTTCGTGGACGG
LOC_Os03g07470
OsAffx.3164.1.S1_at--401--4511Chr03:3774488..3774512 (25 bp)
GCCGACGTCCGGTTCGTGCTCTGCG
LOC_Os03g07470
OsAffx.3164.1.S1_at--151--1911Chr03:3774492..3774516 (25 bp)
ACGTCCGGTTCGTGCTCTGCGGCGC
LOC_Os03g07470
OsAffx.3164.1.S1_at--776--4751Chr03:3774528..3774552 (25 bp)
GCTGCAAGGTGTACGTAGACGACGG
LOC_Os03g07470
OsAffx.3164.1.S1_at--515--4091Chr03:3774562..3774586 (25 bp)
CGACGAGAACCCATTGGACGGCGGC
LOC_Os03g07470
OsAffx.3164.1.S1_at--255--6571Chr03:3774597..3774621 (25 bp)
GATTCCGGCGATGCACGGAGTGCAA
LOC_Os03g07470
OsAffx.3164.1.S1_at--480--4631Chr03:3774604..3774628 (25 bp)
GCGATGCACGGAGTGCAACGAGAAC
LOC_Os03g07470
Target Sequence 
TGCGTCGCGCAAGGTCACGCCGCTGCCGCTGGTGGAGAAGAAGAAGGCGTCGCCGGTGGCGCGTCCGCGCAAGGCCGTGC
TCTACTTCACGTCGCTCCGCGGCGTGCGCGCGACGCACGAGGACTGCTGCCTGGCGCGCGCCATCCTCGGGGGCTACGGC
GTGCGCGTCGACGAGCGCGACGTGTCGATGCACCGGGGATTCCGCGACGAGCTCCACGGCCTGCTCGGCCTCGGCCGTGG
CGCCGCCCTCGCCAAGTGCTGGGCGCCGGCGGCGGCGCCCGCCCTGCCGAGCCTGTTCGTGGACGGCGAGCTCGTGGGCA
ACGCCGACGAGCTGAAGCGGCTGCACGAGGCCGGGGAGCTCGCGGCGAGGCTCGCCGGGTGCGAGAGCGCGGCGCCCGGC
GAGGCCGCCGGCGCGTGCGAGGCCTGCGCCGACGTCCGGTTCGTGCTCTGCGGCGCGTGCTCGGGCAGCTGCAAGGTGTA
CGTAGACGACGGCGACGACGACGACGAGAACCCATTGGACGGCGGCGGCGGCGGGGGATTCCGGCGATGCACGGAGTGCA
ACGAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3164.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis