Browse Element(s) Details


Os.4704.1.S1_at

Description gb:D87819.1
DB_XREF= gi:2723470
GEN=OsSUT1
TID=Os.4704.1
CNT=29
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.4704 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for sucrose transporter, complete cds.
PROD=sucrose transporter
FL= gb:AK109355.2 gb:AK100027.1 gb:D87819.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0748011/11sucrose transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07440NANA3+3755892..3756656Vip1 protein, putative, expressed
LOC_Os03g07450OsAffx.12765.1.S1_x_at11/113+3763394..3766044DNA-binding protein, putative, expressed
LOC_Os03g07450OsAffx.18415.1.S1_x_at4/113+3763394..3766044DNA-binding protein, putative, expressed
LOC_Os03g07460OsAffx.25007.2.S1_at11/113+3766797..3767501hypothetical protein
LOC_Os03g07460OsAffx.25007.2.S1_s_at11/113+3766797..3767501hypothetical protein
LOC_Os03g07460OsAffx.25007.1.S1_at6/113+3766797..3767501hypothetical protein
LOC_Os03g07470OsAffx.3164.1.S1_at11/113+3773693..3774661Glutaredoxin family protein
LOC_Os03g07480Os.4704.1.S1_at11/113+3776807..3783243sucrose transporter, putative, expressed
LOC_Os03g07490NANA3+3786704..3786910hypothetical protein
LOC_Os03g07500Os.45967.1.A1_at1/113+3789494..3789889hypothetical protein
LOC_Os03g07510OsAffx.25008.1.S1_s_at11/113+3793714..3795941hypothetical protein
LOC_Os03g07510Os.52845.1.S1_at6/113+3793714..3795941hypothetical protein
LOC_Os03g07510OsAffx.1396.1.S1_x_at1/113+3793714..3795941hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008506molecular_functionsucrose:hydrogen symporter activity
GO:0008515molecular_functionsucrose transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4704.1.S1_at--354--471Chr03:3777451..3777473 (23 bp)
ATCTCCATCGTCATCCCTCAGGTGG
LOC_Os03g07480
Os.4704.1.S1_at--225--551Chr03:3777321..3777344 (24 bp)
ATCCCTCAGGTGGTCATCGCGCTGG
LOC_Os03g07480
Os.4704.1.S1_at--610--9331Chr03:3777242..3777266 (25 bp)
TCGCCTCGGGATTCGCGCTCATCGG
LOC_Os03g07480
Os.4704.1.S1_at--1136--4691Chr03:3777218..3777242 (25 bp)
GCGGCGTCGCCGGAATATTCCTGCT
LOC_Os03g07480
Os.4704.1.S1_at--850--8211Chr03:3777207..3777231 (25 bp)
GGAATATTCCTGCTGCCCAAGATCT
LOC_Os03g07480
Os.4704.1.S1_at--841--4371Chr03:3777182..3777206 (25 bp)
CCAAGCGCCAGTTCCGGTCGGTCAG
LOC_Os03g07480
Os.4704.1.S1_at--6--4271Chr03:3777085..3777109 (25 bp)
CCGGAAGTGGTGAGCTTTGTAGTTC
LOC_Os03g07480
Os.4704.1.S1_at--875--5911Chr03:3777074..3777098 (25 bp)
GAGCTTTGTAGTTCTCGTTTGCAAT
LOC_Os03g07480
Os.4704.1.S1_at--366--6851Chr03:3777058..3777082 (25 bp)
GTTTGCAATGGATCAAAGGAGCCCC
LOC_Os03g07480
Os.4704.1.S1_at--186--4891Chr03:3776951..3776975 (25 bp)
GCTTTGTTGCCACCTCGGTAGAAGA
LOC_Os03g07480
Os.4704.1.S1_at--513--7311Chr03:3776868..3776892 (25 bp)
GTGCAGTGTGCTTGGTAATTAGTGT
LOC_Os03g07480
Target Sequence 
ATCTCCATCGTCATCCCTCAGGTGGTCATCGCGCTGGGAGCCGGGCCGTGGGACGAGCTGTTCGGGAAGGGGAACATCCC
GGCGTTCGGCCTCGCCTCGGGATTCGCGCTCATCGGCGGCGTCGCCGGAATATTCCTGCTGCCCAAGATCTCCAAGCGCC
AGTTCCGGTCGGTCAGCATGGGCGGCGGTCACTGACCGCCCCGCTCTCGCCGCCGGCTGCGGCGGCGGCGGCGGCCGGAG
CAGCGCCGCCGGAAGTGGTGAGCTTTGTAGTTCTCGTTTGCAATGGATCAAAGGAGCCCCCTCTTTTTTTTTACATAGGG
TAATTAATTAATTAAGGCTGTTAATTAGGAAGGGGTGAGGTGGCCCTGCAGCTGGGGCCCACGCTTTGTTGCCACCTCGG
TAGAAGAGAATAAGCAGATCATGCAGATAATATGGAACTGTAAAACTGTTTTGTGTTGTGTGTGTGTGCAGTGTGCTTGG
TAATTAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4704.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis