Browse Element(s) Details


Os.52845.1.S1_at

Description gb:AK069569.1
DB_XREF= gi:32979593
TID=Os.52845.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52845 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023022K12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022K12, full insert sequence.
FL= gb:AK069569.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g075106/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07470OsAffx.3164.1.S1_at11/113+3773693..3774661Glutaredoxin family protein
LOC_Os03g07480Os.4704.1.S1_at11/113+3776807..3783243sucrose transporter, putative, expressed
LOC_Os03g07490NANA3+3786704..3786910hypothetical protein
LOC_Os03g07500Os.45967.1.A1_at1/113+3789494..3789889hypothetical protein
LOC_Os03g07510OsAffx.25008.1.S1_s_at11/113+3793714..3795941hypothetical protein
LOC_Os03g07510Os.52845.1.S1_at6/113+3793714..3795941hypothetical protein
LOC_Os03g07510OsAffx.1396.1.S1_x_at1/113+3793714..3795941hypothetical protein
LOC_Os03g07530Os.15812.1.S1_at11/113+3813079..3815846kelch repeat-containing F-box family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52845.1.S1_at--510--9511Chr03:3794401..3794425 (25 bp)
TCTCTCCTACGTTGGCTGAGATCGA
LOC_Os03g07510
Os.52845.1.S1_at--126--3871Chr03:3794386..3794410 (25 bp)
CTGAGATCGATTGCTGCCACCTACA
LOC_Os03g07510
Os.52845.1.S1_at--173--2071Chr03:3794364..3794388 (25 bp)
ACATTGGCCGATATGTCAAGCCGGA
LOC_Os03g07510
Os.52845.1.S1_at--1024--1151Chr03:3794324..3794348 (25 bp)
AGTCAGGCTCGTCGAGGATCACCGA
LOC_Os03g07510
Os.52845.1.S1_at--286--6451Chr03:3794308..3794332 (25 bp)
GATCACCGACGAGCAAATCAGCGAT
LOC_Os03g07510
Os.52845.1.S1_at--180--4071Chr03:3794254..3794278 (25 bp)
CGAGGCTCGACTCCGGAGCAATGAT
LOC_Os03g07510
Os.52845.1.S1_at--308--5191NONE
GCAATGATAGAGTGCCATCTTCGAG
NONE
Os.52845.1.S1_at--1086--31Chr03:3793666..3793690 (25 bp)
ATTGTCTTTTGCTGCTGGGCAATCA
NONE
Os.52845.1.S1_at--345--3311Chr03:3793634..3793658 (25 bp)
CACACCCTCGGAATGTTTGTAGCTT
NONE
Os.52845.1.S1_at--757--1051Chr03:3793578..3793602 (25 bp)
AGGGATTCCTAATTCACTCTACGTT
NONE
Os.52845.1.S1_at--1023--6631Chr03:3793535..3793559 (25 bp)
GTTGTCATGTCATCTTCTAAACCAG
NONE
Target Sequence 
TCTCTCCTACGTTGGCTGAGATCGATTGCTGCCACCTACATTGGCCGATATGTCAAGCCGGAGGTCACGGTCGAGGCAGT
CAGGCTCGTCGAGGATCACCGACGAGCAAATCAGCGATCTTGTATCCAAGTTGCAGGATCTCCTCCCCGAGGCTCGACTC
CGGAGCAATGATAGAGTGCCATCTTCGAGGGTTCTGCAGGAGACTTGCAACTACATCAGGAGCTTGCATCAGGANGTCGA
CGACCTGAGCGAGAGGCTGTCGGAGCTGCTGGCCACGTCCGACATGAGCAGCGCGCAGGCGGCGATCATCCGCAGCCTTC
TGATGTAGCCGCCGGCGGCCGTCGTCGCCACATTGTCTTTTGCTGCTGGGCAATCAGCGCGCACACACCCTCGGAATGTT
TGTAGCTTAGAGAGTGATCTTAATTAGTACTGGAGGAGCAGGGATTCCTAATTCACTCTACGTTCATAAGTAATGTAATG
TTGTTGTCATGTCATCTTCTAAACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52845.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis