Browse Element(s) Details


Os.15812.1.S1_at

Description gb:AK062570.1
DB_XREF= gi:32972588
TID=Os.15812.1
CNT=39
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15812 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023139I09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-046-A09, full insert sequence.
FL= gb:AK072716.1 gb:AK062570.1 gb:AK061344.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0753011/11kelch repeat-containing F-box family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07500Os.45967.1.A1_at1/113+3789494..3789889hypothetical protein
LOC_Os03g07510OsAffx.25008.1.S1_s_at11/113+3793714..3795941hypothetical protein
LOC_Os03g07510Os.52845.1.S1_at6/113+3793714..3795941hypothetical protein
LOC_Os03g07510OsAffx.1396.1.S1_x_at1/113+3793714..3795941hypothetical protein
LOC_Os03g07530Os.15812.1.S1_at11/113+3813079..3815846kelch repeat-containing F-box family protein, putative, expressed
LOC_Os03g07540OsAffx.3165.1.S1_at11/113+3824623..3825543bHLH family protein, putative, expressed
LOC_Os03g07560OsAffx.25010.1.S1_x_at11/113+3829576..3829905hypothetical protein
LOC_Os03g07570Os.17960.1.S1_at11/113+3833415..3837453Alanine-glyoxylate aminotransferase 2 homolog 2, mitochondrial precursor, putative, expressed
LOC_Os03g07580Os.19264.1.S1_at11/113+3838558..3843836nucleoporin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15812.1.S1_at--3--3931Chr03:3815248..3815272 (25 bp)
CGGCCATCTGGGAACTTCGTGTATA
LOC_Os03g07530
Os.15812.1.S1_at--889--2931Chr03:3815351..3815375 (25 bp)
AAGGCAGCCTGTTCAATTGCTTCAG
LOC_Os03g07530
Os.15812.1.S1_at--287--1151Chr03:3815374..3815398 (25 bp)
AGTCCTGATGCTCCGTAGCGATTTC
LOC_Os03g07530
Os.15812.1.S1_at--1075--9172Chr09:12821126..12821223 (25 bp)
TGCCTTCTGTCCAGTTTCAGATTCA
NONE
Os.15812.1.S1_at--867--9711Chr03:3815421..3815445 (25 bp)
TCAACTGGGCATCTGCTGAGTGGCA
LOC_Os03g07530
Os.15812.1.S1_at--450--8891Chr03:3815437..3815461 (25 bp)
TGAGTGGCAGCAGTCATGTAACCCC
LOC_Os03g07530
Os.15812.1.S1_at--453--10611Chr03:3815479..3815503 (25 bp)
TTCTGTTTTCCTCGCTAATCCATTT
LOC_Os03g07530
Os.15812.1.S1_at--896--4951Chr03:3815512..3815536 (25 bp)
GCATTTGGATCAACTGCTCGTGATT
LOC_Os03g07530
Os.15812.1.S1_at--289--331Chr03:3815632..3815656 (25 bp)
ATACTCGATTCATATGTGGCTGCAA
LOC_Os03g07530
Os.15812.1.S1_at--690--5491Chr03:3815677..3815701 (25 bp)
GAACACCATGCCTTATGTTTGCTGG
LOC_Os03g07530
Os.15812.1.S1_at--683--3511Chr03:3815815..3815839 (25 bp)
CATGTCTGGGCTGAGAGCTGACCTT
LOC_Os03g07530
Target Sequence 
CGGCCATCTGGGAACTTCGTGTATAATTGTGCTGTGATGGGCTGTTGAATCCACTGAATAAAGATTCAATATGGTGGATT
ATTTATGAAGGATGGTATGCACAAAGGCAGCCTGTTCAATTGCTTCAGTCCTGATGCTCCGTAGCGATTTCTGCCTTCTG
TCCAGTTTCAGATTCAACTGGGCATCTGCTGAGTGGCAGCAGTCATGTAACCCCCTGAGTTCTTCTAATACTTCTGTTTT
CCTCGCTAATCCATTTCAACATTTGCATTTGGATCAACTGCTCGTGATTTGAAAGATACGAGACTATGCAAAACAGTGTT
ATATTAATAATCTAGGAACAGCTTTCAGAAGGCTTTTCACTATTGATGAACAACCTGTTAAGCAATACTCGATTCATATG
TGGCTGCAACAAAGATATTCATCAATTATGAACACCATGCCTTATGTTTGCTGGTATAATTTTCTTTTATCAACTTTACT
TGCTTCANGATGTGCTTGTCTTTCATGAAGTTTTTTNCTAGCAACAACGATATGTTTCATCCTAGTTGTGACTTTTGTTT
GTATAAACATGTCTGGGCTGAGAGCTGACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15812.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis