Browse Element(s) Details


Os.19264.1.S1_at

Description gb:AK073393.1
DB_XREF= gi:32983416
TID=Os.19264.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19264 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033041M14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033041M14, full insert sequence.
FL= gb:AK073393.1 gb:AK122024.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0758011/11nucleoporin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07530Os.15812.1.S1_at11/113+3813079..3815846kelch repeat-containing F-box family protein, putative, expressed
LOC_Os03g07540OsAffx.3165.1.S1_at11/113+3824623..3825543bHLH family protein, putative, expressed
LOC_Os03g07560OsAffx.25010.1.S1_x_at11/113+3829576..3829905hypothetical protein
LOC_Os03g07570Os.17960.1.S1_at11/113+3833415..3837453Alanine-glyoxylate aminotransferase 2 homolog 2, mitochondrial precursor, putative, expressed
LOC_Os03g07580Os.19264.1.S1_at11/113+3838558..3843836nucleoporin family protein, putative, expressed
LOC_Os03g07590Os.12176.1.S1_at11/113+3845621..3846232expressed protein
LOC_Os03g07600Os.52762.1.S1_at11/113+3846298..3850465Calcium-binding protein 39, putative, expressed
LOC_Os03g07610OsAffx.12767.1.S1_at11/113+3851280..3851687hypothetical protein
LOC_Os03g07620OsAffx.12768.1.S1_at11/113+3853264..3853659hypothetical protein
LOC_Os03g07630OsAffx.16205.1.S1_at2/113+3856238..3858562hypothetical protein
LOC_Os03g07640NANA3+3862120..3862749transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g07650Os.57326.1.S1_at11/113+3868676..3869418expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009870biological_processdefense response signaling pathway, resistance gene-dependent
GO:0009910biological_processnegative regulation of flower development
GO:0005634cellular_componentnucleus
GO:0005215molecular_functiontransporter activity
GO:0015288molecular_functionporin activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19264.1.S1_at--422--3771Chr03:3843266..3843290 (25 bp)
CTCGGCAATACATGCACGATTCCAC
LOC_Os03g07580
Os.19264.1.S1_at--387--1811Chr03:3843289..3843313 (25 bp)
ACCCTTCCATGGACGTGGGAGCAAG
LOC_Os03g07580
Os.19264.1.S1_at--376--5171Chr03:3843309..3843333 (25 bp)
GCAAGCTGCATATTTCTCTTCTTCA
LOC_Os03g07580
Os.19264.1.S1_at--527--10531Chr03:3843330..3843354 (25 bp)
TTCAGTCGAGGTACTTTTTCACAGC
LOC_Os03g07580
Os.19264.1.S1_at--774--6131Chr03:3843362..3843386 (25 bp)
GAGGTTATCCCGAAAATACTGTGGT
LOC_Os03g07580
Os.19264.1.S1_at--693--7491Chr03:3843382..3843406 (25 bp)
GTGGTGTACTTTTTCAGAGCTTATG
LOC_Os03g07580
Os.19264.1.S1_at--246--9931Chr03:3843433..3843457 (25 bp)
TACGGAGCTGTAGGCCTGTAACAAT
LOC_Os03g07580
Os.19264.1.S1_at--901--3111Chr03:3843575..3843599 (25 bp)
AATATTTCTTCTGTCGTGCACGCGA
LOC_Os03g07580
Os.19264.1.S1_at--951--1331Chr03:3843695..3843720 (25 bp)
AGAGTGCCCAAACCGTGGACAGCTA
LOC_Os03g07580
Os.19264.1.S1_at--1122--5631Chr03:3843713..3843737 (25 bp)
GACAGCTAACGTGGGTTCCTTGTAT
LOC_Os03g07580
Os.19264.1.S1_at--896--11Chr03:3843806..3843830 (25 bp)
ATTGAGCGGCGTTCCTGGTTTTGTA
LOC_Os03g07580
Target Sequence 
CTCGGCAATACATGCACGATTCCACCCTTCCATGGACGTGGGAGCAAGCTGCATATTTCTCTTCTTCAGTCGAGGTACTT
TTTCACAGCNTTATGATGAGGTTATCCCGAAAATACTGTGGTGTACTTTTTCAGAGCTTATGGGATTATTCCGAAAATAC
TGAGGTTTTACGGAGCTGTAGGCCTGTAACAATTGCAAGGGGATATTTNTTTTTTCTCATCACACGGAAAATGCACAAAG
CAACAACCCCACACTTGCACACTCGTAAATTGGANTGTGTCAGTGTGGCANAGATTTGAGAGCTTAGGTAGAATATTTCT
TCTGTCGTGCACGCGATGTCGCGATGAAATGAAAAATCACAATGTTGGAGTGAGCCNAAACTGCTTTTGCAGAACCATGT
GAAGCTGTGGTTTGTCTGAGGAGAAACATCCAGAGTGCCCAAACCGTGGACAGCTAACGTGGGTTCCTTGTATTCTTCTG
TTTTATTTTCCCCTGCTTAATTTTTGGTTTTCTCATATATATGTACCTTTTATTCCGTTATATTGAGCGGCGTTCCTGGT
TTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19264.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis