Browse Element(s) Details


Os.12176.1.S1_at

Description gb:U25284.2
DB_XREF= gi:7249266
TID=Os.12176.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12176 (NCBI UniGene Cluster)
DEF=Oryza sativa clone OSE3 leucine zipper protein mRNA, complete cds.
PROD=leucine zipper protein
FL= gb:U25284.2 gb:AK121297.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0759011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07540OsAffx.3165.1.S1_at11/113+3824623..3825543bHLH family protein, putative, expressed
LOC_Os03g07560OsAffx.25010.1.S1_x_at11/113+3829576..3829905hypothetical protein
LOC_Os03g07570Os.17960.1.S1_at11/113+3833415..3837453Alanine-glyoxylate aminotransferase 2 homolog 2, mitochondrial precursor, putative, expressed
LOC_Os03g07580Os.19264.1.S1_at11/113+3838558..3843836nucleoporin family protein, putative, expressed
LOC_Os03g07590Os.12176.1.S1_at11/113+3845621..3846232expressed protein
LOC_Os03g07600Os.52762.1.S1_at11/113+3846298..3850465Calcium-binding protein 39, putative, expressed
LOC_Os03g07610OsAffx.12767.1.S1_at11/113+3851280..3851687hypothetical protein
LOC_Os03g07620OsAffx.12768.1.S1_at11/113+3853264..3853659hypothetical protein
LOC_Os03g07630OsAffx.16205.1.S1_at2/113+3856238..3858562hypothetical protein
LOC_Os03g07640NANA3+3862120..3862749transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g07650Os.57326.1.S1_at11/113+3868676..3869418expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12176.1.S1_at--37--4891Chr03:3845761..3845785 (25 bp)
GCTTTGAGCTTTGAGGAGTGTGTCT
LOC_Os03g07590
Os.12176.1.S1_at--844--3851Chr03:3845784..3845808 (25 bp)
CTGAGAGTTTGGTCATGGCGGACAT
LOC_Os03g07590
Os.12176.1.S1_at--105--9631Chr03:3845796..3845820 (25 bp)
TCATGGCGGACATCGCGTTGCTGGT
LOC_Os03g07590
Os.12176.1.S1_at--971--4491Chr03:3845903..3845927 (25 bp)
GCCGTCATCAAGGTGTGCAGCTCGT
LOC_Os03g07590
Os.12176.1.S1_at--1035--3671Chr03:3846043..3846067 (25 bp)
CTAGTCGCTTCACAGTTTTTTCTTT
LOC_Os03g07590
Os.12176.1.S1_at--314--10071Chr03:3846124..3846148 (25 bp)
TAGTCTATTATGTATCTCTCCTCCT
LOC_Os03g07590
Os.12176.1.S1_at--409--751Chr03:3846133..3846157 (25 bp)
ATGTATCTCTCCTCCTTTGATACAG
LOC_Os03g07590
Os.12176.1.S1_at--35--3691Chr03:3846147..3846171 (25 bp)
CTTTGATACAGCTCGGTCACCGTGT
LOC_Os03g07590
Os.12176.1.S1_at--318--4811Chr03:3846157..3846181 (25 bp)
GCTCGGTCACCGTGTTGATGTAAAT
LOC_Os03g07590
Os.12176.1.S1_at--995--3971Chr03:3846167..3846191 (25 bp)
CGTGTTGATGTAAATATAGCCGCTT
LOC_Os03g07590
Os.12176.1.S1_at--754--231Chr03:3846180..3846204 (25 bp)
ATATAGCCGCTTAATTTTTGTCTTT
LOC_Os03g07590
Target Sequence 
GCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGA
AGCTCAAGAGGGGGGCGCCGGGCGAGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTGC
AGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACGTNCGCGCTGCTCAACGTCGACCCCA
AGTCCGGGCCCGCCGTCGCCGCCATGGACGGCGCCTTCTCCGCCTAGTCGCTTCACAGTTTTTTCTTTTTTGTTCTTCTT
CTTTTTTACTCAAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCT
CGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis