Browse Element(s) Details


OsAffx.3165.1.S1_at

Description tigr:9631.m00688
TID=OsAffx.3165.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0754011/11bHLH family protein, putative, expressed
LOC_Os06g107501/11nodulin MtN21 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07530Os.15812.1.S1_at11/113+3813079..3815846kelch repeat-containing F-box family protein, putative, expressed
LOC_Os03g07540OsAffx.3165.1.S1_at11/113+3824623..3825543bHLH family protein, putative, expressed
LOC_Os03g07560OsAffx.25010.1.S1_x_at11/113+3829576..3829905hypothetical protein
LOC_Os03g07570Os.17960.1.S1_at11/113+3833415..3837453Alanine-glyoxylate aminotransferase 2 homolog 2, mitochondrial precursor, putative, expressed
LOC_Os03g07580Os.19264.1.S1_at11/113+3838558..3843836nucleoporin family protein, putative, expressed
LOC_Os03g07590Os.12176.1.S1_at11/113+3845621..3846232expressed protein
LOC_Os03g07600Os.52762.1.S1_at11/113+3846298..3850465Calcium-binding protein 39, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3165.1.S1_at--463--8731Chr03:3824683..3824707 (25 bp)
TGTCACTTCCACATTTTCTTTGCTC
LOC_Os03g07540
OsAffx.3165.1.S1_at--1135--3311Chr03:3824711..3824735 (25 bp)
CACTGTCCGTACGTCGTCGGCTTGA
LOC_Os03g07540
OsAffx.3165.1.S1_at--561--9451Chr03:3824727..3824751 (25 bp)
TCGGCTTGATCACCAACCTTGCTGA
LOC_Os03g07540
OsAffx.3165.1.S1_at--16--1731Chr03:3824742..3824766 (25 bp)
ACCTTGCTGACGGTGGTCGGTCGCC
LOC_Os03g07540
OsAffx.3165.1.S1_at--1061--8612Chr06:5615487..5615566 (24 bp)
TGGTGATATTGCAGGCGGCGACCAT
LOC_Os06g10750
OsAffx.3165.1.S1_at--930--1031Chr03:3825294..3825318 (25 bp)
AGGTGGACGACCTGTCCGACCGGCT
LOC_Os03g07540
OsAffx.3165.1.S1_at--145--2211Chr03:3825345..3825369 (25 bp)
ACAACAGCCCGCAGGCCGAGATCAT
LOC_Os03g07540
OsAffx.3165.1.S1_at--1079--7391Chr03:3825385..3825409 (25 bp)
GTGATCGATCCTAGCTCTATCAGTA
LOC_Os03g07540
OsAffx.3165.1.S1_at--1052--9991Chr03:3825396..3825420 (25 bp)
TAGCTCTATCAGTAGCTGCAGCGAC
LOC_Os03g07540
OsAffx.3165.1.S1_at--1156--10731Chr03:3825429..3825453 (25 bp)
TTGATGGAGGACGAGCTTGCTAGCT
LOC_Os03g07540
OsAffx.3165.1.S1_at--980--6151Chr03:3825461..3825485 (25 bp)
GAGGAGGGAGACGACAAGATTTTTT
LOC_Os03g07540
Target Sequence 
TGTCACTTCCACATTTTCTTTGCTCTCTCACTGTCCGTACGTCGTCGGCTTGATCACCAACCTTGCTGACGGTGGTCGGT
CGCCGGAGTTCGAGGAGAAGAAGGCAGTAGAGGTGTGGTGGTGATATTGCAGGCGGCGACCATGTCGAGCCGCCGTGGTG
GTGGTGGTGGAGGAGGGAGGATCACCGACGAGGAGATCAACGAGCTCATCTCCAAGCTTCAGGCCCTCCTCCCGGAGTCC
TCCCGCAGCCGCGGCGCAAGCCGGTCGTCGGCGTCGAAGCTGCTCAAGGAGACGTGCAGCTACATCAAGAGCCTGCACCG
GGAGGTGGACGACCTGTCCGACCGGCTGTCGGAGCTCATGTCGACGATGGACAACAACAGCCCGCAGGCCGAGATCATCC
GGAGCCTCCTCCGGTGATCGATCCTAGCTCTATCAGTAGCTGCAGCGACGACGACGATTGATGGAGGACGAGCTTGCTAG
CTAGCGATTGAGGAGGGAGACGACAAGATTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3165.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis