Browse Element(s) Details


OsAffx.25010.1.S1_x_at

Description tigr:9631.m00690
TID=OsAffx.25010.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0756011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07530Os.15812.1.S1_at11/113+3813079..3815846kelch repeat-containing F-box family protein, putative, expressed
LOC_Os03g07540OsAffx.3165.1.S1_at11/113+3824623..3825543bHLH family protein, putative, expressed
LOC_Os03g07560OsAffx.25010.1.S1_x_at11/113+3829576..3829905hypothetical protein
LOC_Os03g07570Os.17960.1.S1_at11/113+3833415..3837453Alanine-glyoxylate aminotransferase 2 homolog 2, mitochondrial precursor, putative, expressed
LOC_Os03g07580Os.19264.1.S1_at11/113+3838558..3843836nucleoporin family protein, putative, expressed
LOC_Os03g07590Os.12176.1.S1_at11/113+3845621..3846232expressed protein
LOC_Os03g07600Os.52762.1.S1_at11/113+3846298..3850465Calcium-binding protein 39, putative, expressed
LOC_Os03g07610OsAffx.12767.1.S1_at11/113+3851280..3851687hypothetical protein
LOC_Os03g07620OsAffx.12768.1.S1_at11/113+3853264..3853659hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25010.1.S1_x_at--624--3271Chr03:3829844..3829868 (25 bp)
CAAAGCAAACTACTATTAAGCCCAA
LOC_Os03g07560
OsAffx.25010.1.S1_x_at--838--8191Chr03:3829755..3829779 (25 bp)
GGAAGAGGATGCTCGTACCTGTGCT
LOC_Os03g07560
OsAffx.25010.1.S1_x_at--417--2791Chr03:3829753..3829777 (25 bp)
AAGAGGATGCTCGTACCTGTGCTCA
LOC_Os03g07560
OsAffx.25010.1.S1_x_at--600--6171Chr03:3829751..3829775 (25 bp)
GAGGATGCTCGTACCTGTGCTCACC
LOC_Os03g07560
OsAffx.25010.1.S1_x_at--1065--9951Chr03:3829740..3829764 (25 bp)
TACCTGTGCTCACCGACAACGAGGC
LOC_Os03g07560
OsAffx.25010.1.S1_x_at--691--1871Chr03:3829722..3829746 (25 bp)
ACGAGGCGGTGGGAACAACGTGCAA
LOC_Os03g07560
OsAffx.25010.1.S1_x_at--248--2471Chr03:3829709..3829733 (25 bp)
AACAACGTGCAAGGACGGTGGCGCT
LOC_Os03g07560
OsAffx.25010.1.S1_x_at--534--8471Chr03:3829682..3829706 (25 bp)
TGGCTCGCGGGAAGCGGGTGACGAA
LOC_Os03g07560
OsAffx.25010.1.S1_x_at--615--8931Chr03:3829664..3829688 (25 bp)
TGACGAAGACCTCGGCGTTGCTCGA
LOC_Os03g07560
OsAffx.25010.1.S1_x_at--608--4091Chr03:3829642..3829666 (25 bp)
CGACGCGGGCAGAGATGAGGAACTT
LOC_Os03g07560
OsAffx.25010.1.S1_x_at--824--7211Chr03:3829610..3829634 (25 bp)
GTCGAGACAGAGTCGAGGCAGAGTT
LOC_Os03g07560
Target Sequence 
CAAAGCAAACTACTATTAAGCCCAAAAGAGAAGCTTTCAGATCTACCAGAGAAGCTGAGTTTGAGGCAAAGAAAAAAAAG
GAACAACGAGGAAGAGGATGCTCGTACCTGTGCTCACCGACAACGAGGCGGTGGGAACAACGTGCAAGGACGGTGGCGCT
GGTGGCTCGCGGGAAGCGGGTGACGAAGACCTCGGCGTTGCTCGACGCGGGCAGAGATGAGGAACTTGTGGGGAGTCGAG
ACAGAGTCGAGGCAGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25010.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis