Browse Element(s) Details


Os.17960.1.S1_at

Description gb:AK105642.1
DB_XREF= gi:32990851
TID=Os.17960.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17960 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-E11, full insert sequence.
FL= gb:AK105642.1 gb:AK061079.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0757011/11Alanine-glyoxylate aminotransferase 2 homolog 2, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07530Os.15812.1.S1_at11/113+3813079..3815846kelch repeat-containing F-box family protein, putative, expressed
LOC_Os03g07540OsAffx.3165.1.S1_at11/113+3824623..3825543bHLH family protein, putative, expressed
LOC_Os03g07560OsAffx.25010.1.S1_x_at11/113+3829576..3829905hypothetical protein
LOC_Os03g07570Os.17960.1.S1_at11/113+3833415..3837453Alanine-glyoxylate aminotransferase 2 homolog 2, mitochondrial precursor, putative, expressed
LOC_Os03g07580Os.19264.1.S1_at11/113+3838558..3843836nucleoporin family protein, putative, expressed
LOC_Os03g07590Os.12176.1.S1_at11/113+3845621..3846232expressed protein
LOC_Os03g07600Os.52762.1.S1_at11/113+3846298..3850465Calcium-binding protein 39, putative, expressed
LOC_Os03g07610OsAffx.12767.1.S1_at11/113+3851280..3851687hypothetical protein
LOC_Os03g07620OsAffx.12768.1.S1_at11/113+3853264..3853659hypothetical protein
LOC_Os03g07630OsAffx.16205.1.S1_at2/113+3856238..3858562hypothetical protein
LOC_Os03g07640NANA3+3862120..3862749transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006561biological_processproline biosynthesis
GO:0042538biological_processhyperosmotic salinity response
GO:0005739cellular_componentmitochondrion
GO:0003992molecular_functionacetylornithine transaminase activity
GO:0004587molecular_functionornithine-oxo-acid transaminase activity
GO:0008453molecular_functionalanine-glyoxylate transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17960.1.S1_at--1123--5291Chr03:3836708..3836732 (25 bp)
GAAGGAGAAGACACCTGCCAAGGCC
LOC_Os03g07570
Os.17960.1.S1_at--820--7731Chr03:3836888..3836912 (25 bp)
GGTGGTCTGCATGGTAATGTCTTCA
LOC_Os03g07570
Os.17960.1.S1_at--335--7951Chr03:3836913..3836937 (25 bp)
GGATAAAACCACCAATGTGCTTTAC
LOC_Os03g07570
Os.17960.1.S1_at--651--7991Chr03:3836941..3837048 (25 bp)
GGATGATGCAGATTACCTGGTGGAT
LOC_Os03g07570
Os.17960.1.S1_at--311--8631Chr03:3837041..3837065 (25 bp)
TGGTGGATGCCATGGACTATGCAAT
LOC_Os03g07570
Os.17960.1.S1_at--141--5711Chr03:3837055..3837079 (25 bp)
GACTATGCAATGTCAGGGCTCTGAG
LOC_Os03g07570
Os.17960.1.S1_at--237--8331Chr03:3837071..3837095 (25 bp)
GGCTCTGAGAGCTGCACCCTGAATA
LOC_Os03g07570
Os.17960.1.S1_at--393--5071Chr03:3837084..3837108 (25 bp)
GCACCCTGAATACCAAAGCCGTCTG
LOC_Os03g07570
Os.17960.1.S1_at--1152--1691Chr03:3837156..3837180 (25 bp)
AGCCAACTCTTTCCATGTACATGCT
LOC_Os03g07570
Os.17960.1.S1_at--1103--8731Chr03:3837171..3837195 (25 bp)
TGTACATGCTTCCAGTTCCAGTTGA
LOC_Os03g07570
Os.17960.1.S1_at--595--4351Chr03:3837182..3837206 (25 bp)
CCAGTTCCAGTTGATGTGTTGTGTA
LOC_Os03g07570
Target Sequence 
GAAGGAGAAGACACCTGCCAAGGCCGAGACCAATTTATTGTTTGAGAAACTCAAGGATCTCAACATTTTAGTTGGAAAAG
GTGGTCTGCATGGTAATGTCTTCAGGATAAAACCACCAATGTGCTTTACAAGGGATGATGCAGATTACCTGGTGGATGCC
ATGGACTATGCAATGTCAGGGCTCTGAGAGCTGCACCCTGAATACCAAAGCCGTCTGCCATCCTCAACGCAAGAAGATTC
ATGTCATGATGCTACCGGTAGCCCAGCCAACTCTTTCCATGTACATGCTTCCAGTTCCAGTTGATGTGTTGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis