Browse Element(s) Details


Os.57326.1.S1_at

Description gb:AK111307.1
DB_XREF= gi:32996516
TID=Os.57326.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57326 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-B10, full insert sequence.
FL= gb:AK111307.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0765011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07580Os.19264.1.S1_at11/113+3838558..3843836nucleoporin family protein, putative, expressed
LOC_Os03g07590Os.12176.1.S1_at11/113+3845621..3846232expressed protein
LOC_Os03g07600Os.52762.1.S1_at11/113+3846298..3850465Calcium-binding protein 39, putative, expressed
LOC_Os03g07610OsAffx.12767.1.S1_at11/113+3851280..3851687hypothetical protein
LOC_Os03g07620OsAffx.12768.1.S1_at11/113+3853264..3853659hypothetical protein
LOC_Os03g07630OsAffx.16205.1.S1_at2/113+3856238..3858562hypothetical protein
LOC_Os03g07640NANA3+3862120..3862749transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g07650Os.57326.1.S1_at11/113+3868676..3869418expressed protein
LOC_Os03g07660OsAffx.25011.1.S1_at11/113+3872158..3872520hypothetical protein
LOC_Os03g07670NANA3+3873943..3877272transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g07680Os.45976.1.S1_x_at3/113+3879573..3883226transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g07690NANA3+3889584..3890018hypothetical protein
LOC_Os03g07700OsAffx.12769.1.S1_at11/113+3890769..3891122hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004869molecular_functioncysteine protease inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57326.1.S1_at--78--5611Chr03:3869002..3869026 (25 bp)
GACACGTGGAAGCTCCGCAGGTTCA
LOC_Os03g07650
Os.57326.1.S1_at--162--6691Chr03:3868967..3868991 (25 bp)
GTTGCCCTGAAGTACGTACGCTGTA
LOC_Os03g07650
Os.57326.1.S1_at--78--6391Chr03:3868928..3868952 (25 bp)
GATCGAACGACATGCCAAACTCAAA
LOC_Os03g07650
Os.57326.1.S1_at--636--2611Chr03:3868889..3868913 (25 bp)
AACCCATTACGACCTCATTATACAT
LOC_Os03g07650
Os.57326.1.S1_at--312--1191Chr03:3868817..3868841 (25 bp)
AGTAGCTAGCATGATCGTGCTCTCT
LOC_Os03g07650
Os.57326.1.S1_at--326--511Chr03:3868804..3868828 (25 bp)
ATCGTGCTCTCTTTTCATTCATGTT
LOC_Os03g07650
Os.57326.1.S1_at--1116--111Chr03:3868788..3868812 (25 bp)
ATTCATGTTCCGGTGTTCGTGGCCA
LOC_Os03g07650
Os.57326.1.S1_at--399--7551Chr03:3868770..3868794 (25 bp)
GTGGCCATTTCTCGCACAAGAGGTG
LOC_Os03g07650
Os.57326.1.S1_at--489--8651Chr03:3868747..3868771 (25 bp)
TGGGCATGCAATAAGGTTTCTCCTT
LOC_Os03g07650
Os.57326.1.S1_at--531--6831Chr03:3868732..3868756 (25 bp)
GTTTCTCCTTTGTCAGGAGGTCACA
LOC_Os03g07650
Os.57326.1.S1_at--154--6951Chr03:3868696..3868720 (25 bp)
GTAGTATCATTTTCACACTCGAGTT
LOC_Os03g07650
Target Sequence 
GACACGTGGAAGCTCCGCAGGTTCAGGAGGATACAGTTGCCCTGAAGTACGTACGCTGTACACACGACCCGATCGATCGA
ACGACATGCCAAACTCAAATACTCAATACATACAACCCATTACGACCTCATTATACATCGATATCGGTTAATTCAAGCTT
GGATGAGCCGAAATTAAACTGTACTAGTAGCTAGCATGATCGTGCTCTCTTTTCATTCATGTTCCGGTGTTCGTGGCCAT
TTCTCGCACAAGAGGTGGGCATGCAATAAGGTTTCTCCTTTGTCAGGAGGTCACATATATTTTTTAGTAGTATCATTTTC
ACACTCGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57326.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis