Browse Element(s) Details


Os.28022.1.S1_s_at

Description gb:AY174093.1
DB_XREF= gi:30313664
TID=Os.28022.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28022 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) MADS30 mRNA, complete cds.
PROD=MADS30
FL= gb:AY174093.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4565011/11MADS-box protein ZMM17, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45610Os.28031.1.S1_at11/116+27613153..27613832expressed protein
LOC_Os06g45620OsAffx.5116.2.S1_at11/116+27617994..27620708hypothetical protein
LOC_Os06g45630Os.56488.1.S1_at11/116+27621773..27625273Leucine Rich Repeat family protein, expressed
LOC_Os06g45630OsAffx.2759.1.S1_x_at1/116+27621773..27625273Leucine Rich Repeat family protein, expressed
LOC_Os06g45640Os.24566.1.S1_at11/116+27626770..27632039CCAAT-box binding factor HAP5 homolog, putative, expressed
LOC_Os06g45650Os.28022.1.S1_s_at11/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650Os.37090.1.S1_x_at10/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650Os.52495.1.S1_at9/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650Os.38268.2.S1_s_at1/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45660Os.22567.1.S1_at11/116+27655876..2765801214 kDa zinc-binding protein, putative, expressed
LOC_Os06g45670Os.13875.1.S1_at11/116+27658072..27660168Glycine cleavage system H protein 1, mitochondrial precursor, putative, expressed
LOC_Os06g45680OsAffx.26553.1.S1_at11/116+27661323..27661827hypothetical protein
LOC_Os06g45680OsAffx.26553.1.S1_x_at11/116+27661323..27661827hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008360biological_processregulation of cell shape
GO:0009908biological_processflower development
GO:0009911biological_processpositive regulation of flower development
GO:0009933biological_processmeristem organization
GO:0010023biological_processproanthocyanidin biosynthesis
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28022.1.S1_s_at--1083--2871Chr06:27637000..27637024 (25 bp)
AAGGGCAAGCTCTTCGACTTCTGCA
LOC_Os06g45650
Os.28022.1.S1_s_at--181--6251Chr06:27637699..27637723 (25 bp)
GATGGAGCTGTTTCACCGTTATGAG
LOC_Os06g45650
Os.28022.1.S1_s_at--297--9671Chr06:27637711..27637735 (25 bp)
TCACCGTTATGAGATCACCACCAGA
LOC_Os06g45650
Os.28022.1.S1_s_at--834--5531Chr06:27637734..27637758 (25 bp)
GAAACACTCGGCTTCAGGAGACAAA
LOC_Os06g45650
Os.28022.1.S1_s_at--320--2971Chr06:27637911..27637935 (25 bp)
AATGGTCATGGAGATCACAAGGCTA
LOC_Os06g45650
Os.28022.1.S1_s_at--47--5831Chr06:27637948..27637972 (25 bp)
GACCAGCTCGAAGCCAGTTTAAGGA
LOC_Os06g45650
Os.28022.1.S1_s_at--386--5971Chr06:27637982..27638006 (25 bp)
GAGAAGACCTGTCATCTGTGTCCAC
LOC_Os06g45650
Os.28022.1.S1_s_at--281--8711Chr06:27638000..27638024 (25 bp)
TGTCCACAGTGGATGAGCTCAGCCA
LOC_Os06g45650
Os.28022.1.S1_s_at--1117--9031Chr06:27638027..27638051 (25 bp)
TGCAGCTGCAGCTTGAATCATCTCT
LOC_Os06g45650
Os.28022.1.S1_s_at--267--5251Chr06:27638041..27638065 (25 bp)
GAATCATCTCTCAGCAAAGTTCATG
LOC_Os06g45650
Os.28022.1.S1_s_at--655--3391Chr06:27638253..27638276 (24 bp)
CAGCTGGAGGATATGCGTCGCATGC
LOC_Os06g45650
Target Sequence 
AAGGGCAAGCTCTTCGACTTCTGCAGCCCGCCGGTCATCTTGATGGAGCTGTTTCACCGTTATGAGATCACCACCAGAAA
CACTCGGCTTCAGGAGACAAACCGTGATGATGAGCAAATGGTCATGGAGATCACAAGGCTAAGGAATGAGATCGACCAGC
TCGAAGCCAGTTTAAGGAGGCAAACTGGAGAAGACCTGTCATCTGTGTCCACAGTGGATGAGCTCAGCCAGCTGCAGCTG
CAGCTTGAATCATCTCTCAGCAAAGTTCATGCGAGGAAGGATGAGCTCATGAGCCAGCAGCTGGAGGATATGCGTCGCAT
GC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28022.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis