Browse Element(s) Details


OsAffx.26553.1.S1_x_at

Description tigr:9634.m04439
TID=OsAffx.26553.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4568011/11hypothetical protein
LOC_Os04g506707/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45650Os.28022.1.S1_s_at11/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650Os.37090.1.S1_x_at10/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650Os.52495.1.S1_at9/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650Os.38268.2.S1_s_at1/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45660Os.22567.1.S1_at11/116+27655876..2765801214 kDa zinc-binding protein, putative, expressed
LOC_Os06g45670Os.13875.1.S1_at11/116+27658072..27660168Glycine cleavage system H protein 1, mitochondrial precursor, putative, expressed
LOC_Os06g45680OsAffx.26553.1.S1_at11/116+27661323..27661827hypothetical protein
LOC_Os06g45680OsAffx.26553.1.S1_x_at11/116+27661323..27661827hypothetical protein
LOC_Os06g45690OsAffx.5117.1.S1_at11/116+27665634..27669509NB-ARC domain containing protein, expressed
LOC_Os06g45700NANA6+27671518..27671769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g45710Os.11118.1.S1_at11/116+27675392..27678753Phosphoglycerate kinase, cytosolic, putative, expressed
LOC_Os06g45720OsAffx.28121.1.S1_at11/116+27680410..27681489BTB/POZ domain containing protein
LOC_Os06g45730Os.55412.1.S1_at11/116+27682634..27684558BTB/POZ domain containing protein, expressed
LOC_Os06g45730OsAffx.30579.1.S1_x_at1/116+27682634..27684558BTB/POZ domain containing protein, expressed
LOC_Os06g45740NANA6+27686302..27689021retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26553.1.S1_x_at--45--8292Chr06:27661389..27661413 (25 bp)
GGCATCTCGTACGTCTTGGTGAAGC
LOC_Os06g45680
OsAffx.26553.1.S1_x_at--97--10852Chr06:27661404..27661425 (22 bp)
TTGGTGAAGCAGTTGCCCGGCGCTC
LOC_Os06g45680
OsAffx.26553.1.S1_x_at--446--9511Chr06:27661511..27661535 (25 bp)
TCTCTGCATGGCCTATGACAAGGCA
LOC_Os06g45680
OsAffx.26553.1.S1_x_at--947--3831Chr06:27661514..27661538 (25 bp)
CTGCATGGCCTATGACAAGGCAGCA
LOC_Os06g45680
OsAffx.26553.1.S1_x_at--1083--2931Chr06:27661538..27661562 (25 bp)
AAGGCTGTTGCCGACAAGCTCCTTT
LOC_Os06g45680
OsAffx.26553.1.S1_x_at--1010--8331Chr06:27661540..27661564 (25 bp)
GGCTGTTGCCGACAAGCTCCTTTGC
LOC_Os06g45680
OsAffx.26553.1.S1_x_at--378--2212Chr06:27661551..27661575 (25 bp)
ACAAGCTCCTTTGCCGCTGAAGAAA
LOC_Os06g45680
OsAffx.26553.1.S1_x_at--498--4792Chr06:27661555..27661579 (25 bp)
GCTCCTTTGCCGCTGAAGAAACCCA
LOC_Os06g45680
OsAffx.26553.1.S1_x_at--701--10692Chr06:27661561..27661585 (25 bp)
TTGCCGCTGAAGAAACCCACCACAA
LOC_Os06g45680
OsAffx.26553.1.S1_x_at--307--8992Chr06:27661568..27661592 (25 bp)
TGAAGAAACCCACCACAACCGTGAT
LOC_Os06g45680
OsAffx.26553.1.S1_x_at--811--2732Chr06:27661570..27661594 (25 bp)
AAGAAACCCACCACAACCGTGATGC
LOC_Os06g45680
Target Sequence 
GGCATCTCGTACGTCTTGGTGAAGCAGTTGCCCGGCGCTCCATCCCCTGCAGTCTCTGCATGGCCTATGACAAGGCAGCA
AGGCTGTTGCCGACAAGCTCCTTTGCCGCTGAAGAAACCCACCACAACCGTGATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26553.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis