Browse Element(s) Details


OsAffx.30579.1.S1_x_at

Description tigr:9638.m02448
TID=OsAffx.30579.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=snRNP protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2879011/11BTB/POZ domain containing protein
LOC_Os10g287602/11BTB/POZ domain containing protein
LOC_Os10g287801/11BTB/POZ domain containing protein
LOC_Os06g457301/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28724OsAffx.22848.4.S1_x_at1/1110+14663569..14667090retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g28724OsAffx.22848.3.S1_x_at1/1110+14663569..14667090retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g28740NANA10+14667436..14669515retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g28750NANA10+14672567..14673019transposon protein, putative, unclassified
LOC_Os10g28760OsAffx.30578.2.S1_x_at11/1110+14674030..14675178BTB/POZ domain containing protein
LOC_Os10g28760OsAffx.30578.1.S1_x_at4/1110+14674030..14675178BTB/POZ domain containing protein
LOC_Os10g28760OsAffx.30579.1.S1_x_at2/1110+14674030..14675178BTB/POZ domain containing protein
LOC_Os10g28760OsAffx.30579.1.S1_at1/1110+14674030..14675178BTB/POZ domain containing protein
LOC_Os10g28770OsAffx.30578.2.S1_x_at11/1110+14676765..14677883BTB/POZ domain containing protein
LOC_Os10g28770OsAffx.30578.1.S1_x_at4/1110+14676765..14677883BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30578.1.S1_at11/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30578.1.S1_x_at11/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30578.2.S1_x_at10/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30579.1.S1_x_at1/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28790OsAffx.30579.1.S1_x_at11/1110+14686132..14687253BTB/POZ domain containing protein
LOC_Os10g28790OsAffx.30579.1.S1_at11/1110+14686132..14687253BTB/POZ domain containing protein
LOC_Os10g28800NANA10+14688461..14689377hypothetical protein
LOC_Os10g28810OsAffx.30580.1.S1_at11/1110+14690522..14691709BTB/POZ domain containing protein
LOC_Os10g28820OsAffx.20331.1.S1_at11/1110+14696426..14697550BTB/POZ domain containing protein
LOC_Os10g28830OsAffx.8116.1.S1_at11/1110+14705000..14705534hypothetical protein
LOC_Os10g28840OsAffx.6801.1.S1_at11/1110+14706697..14707554BTB/POZ domain containing protein
LOC_Os10g28840OsAffx.18433.1.S1_x_at1/1110+14706697..14707554BTB/POZ domain containing protein
LOC_Os10g28850OsAffx.8115.1.S1_at11/1110+14709194..14711308hypothetical protein
LOC_Os10g28850OsAffx.14019.1.S1_at1/1110+14709194..14711308hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30579.1.S1_x_at--535--8352Chr10:14686696..14686720 (25 bp)
GGCGGCCTCCTCGAGTCCATGGAAG
LOC_Os10g28790
OsAffx.30579.1.S1_x_at--862--6091Chr10:14686708..14686732 (25 bp)
GAGTCCATGGAAGGCGCCGATGTCA
LOC_Os10g28790
OsAffx.30579.1.S1_x_at--480--8511Chr10:14686715..14686739 (25 bp)
TGGAAGGCGCCGATGTCACGTTCCA
LOC_Os10g28790
OsAffx.30579.1.S1_x_at--28--9693Chr10:14686730..14686754 (25 bp)
TCACGTTCCACGTCGCCGGCGAGGA
LOC_Os10g28790
OsAffx.30579.1.S1_x_at--965--8872Chr10:14686955..14686979 (25 bp)
TGATGGCGCAGCATCTGCTCGTGGC
LOC_Os10g28790
OsAffx.30579.1.S1_x_at--748--3951Chr10:14687078..14687102 (25 bp)
CGGAGCAGCACCATTGCCGTGGCCT
LOC_Os10g28790
OsAffx.30579.1.S1_x_at--87--7891Chr10:14687120..14687144 (25 bp)
GGTTCATCGACTCGACGGCGACGAT
LOC_Os10g28790
OsAffx.30579.1.S1_x_at--83--4091Chr10:14687159..14687183 (25 bp)
CGAGCGACGGGTTCGAGCATCTGAT
LOC_Os10g28790
OsAffx.30579.1.S1_x_at--511--5931Chr10:14687173..14687197 (25 bp)
GAGCATCTGATCAAGAGCTGCCCGT
LOC_Os10g28790
OsAffx.30579.1.S1_x_at--588--9172Chr10:14687191..14687215 (25 bp)
TGCCCGTCTCTTGTCAAGGAGCTCA
LOC_Os10g28790
OsAffx.30579.1.S1_x_at--21--9591Chr10:14687199..14687223 (25 bp)
TCTTGTCAAGGAGCTCATTGTCAGG
LOC_Os10g28790
Target Sequence 
GGCGGCCTCCTCGAGTCCATGGAAGGCGCCGATGTCACGTTCCACGTCGCCGGCGAGGAGGTGCCCGCGCACCGGTCCGT
GCTCGCGGCGCGGTCGCCGGTGTTCAGGGCGGAGCTCTTCGGCGCGATGAAGGAGAGCGTGAGCGGCGGCAGCAACGCCG
TGGTGGAGGTGGATGACATGGAGGCCGACGTGTTCAGGGCCCTCCTGGCCTTCGTCTACACCGACGAGCTGCCGGAGACG
GAGACGAAGCAGCAGGTGGTGATGGCGCAGCATCTGCTCGTGGCGGCGGACAGGTACGGGATGCAGAGGCTGATGCGGCT
GTGCGAGGAGAAGCTGTGCGGGCGCGTCGAGCTGGGCTCGGCGGCGACGCTCATGGCGCTGGCGGAGCAGCACCATTGCC
GTGGCCTCAAGGAGGCGTGCCTCCGGTTCATCGACTCGACGGCGACGATGGTCGCGGTGATGGCGAGCGACGGGTTCGAG
CATCTGATCAAGAGCTGCCCGTCTCTTGTCAAGGAGCTCATTGTCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30579.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis