Browse Element(s) Details


OsAffx.30578.2.S1_x_at

Description gb:NM_196557.1
DB_XREF= gi:37534473
TID=OsAffx.30578.2
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0075H14.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2877011/11BTB/POZ domain containing protein
LOC_Os10g2876011/11BTB/POZ domain containing protein
LOC_Os10g2878010/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28710Os.22987.1.S1_at11/1110+14654071..14656835expressed protein
LOC_Os10g28724OsAffx.22848.4.S1_x_at1/1110+14663569..14667090retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g28724OsAffx.22848.3.S1_x_at1/1110+14663569..14667090retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g28740NANA10+14667436..14669515retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g28750NANA10+14672567..14673019transposon protein, putative, unclassified
LOC_Os10g28760OsAffx.30578.2.S1_x_at11/1110+14674030..14675178BTB/POZ domain containing protein
LOC_Os10g28760OsAffx.30578.1.S1_x_at4/1110+14674030..14675178BTB/POZ domain containing protein
LOC_Os10g28760OsAffx.30579.1.S1_x_at2/1110+14674030..14675178BTB/POZ domain containing protein
LOC_Os10g28760OsAffx.30579.1.S1_at1/1110+14674030..14675178BTB/POZ domain containing protein
LOC_Os10g28770OsAffx.30578.2.S1_x_at11/1110+14676765..14677883BTB/POZ domain containing protein
LOC_Os10g28770OsAffx.30578.1.S1_x_at4/1110+14676765..14677883BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30578.1.S1_at11/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30578.1.S1_x_at11/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30578.2.S1_x_at10/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30579.1.S1_x_at1/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28790OsAffx.30579.1.S1_x_at11/1110+14686132..14687253BTB/POZ domain containing protein
LOC_Os10g28790OsAffx.30579.1.S1_at11/1110+14686132..14687253BTB/POZ domain containing protein
LOC_Os10g28800NANA10+14688461..14689377hypothetical protein
LOC_Os10g28810OsAffx.30580.1.S1_at11/1110+14690522..14691709BTB/POZ domain containing protein
LOC_Os10g28820OsAffx.20331.1.S1_at11/1110+14696426..14697550BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30578.2.S1_x_at--227--913Chr10:14674706..14674730 (25 bp)
AGGCGGAGCTCTTCGGCCAGATGAA
LOC_Os10g28760
OsAffx.30578.2.S1_x_at--909--3753Chr10:14674714..14674738 (25 bp)
CTCTTCGGCCAGATGAAGGAGAGCA
LOC_Os10g28760
OsAffx.30578.2.S1_x_at--934--10593Chr10:14674717..14674741 (25 bp)
TTCGGCCAGATGAAGGAGAGCAGCA
LOC_Os10g28760
OsAffx.30578.2.S1_x_at--471--4653Chr10:14674777..14674801 (25 bp)
GCGGAGGTGTTCAGGGCCCTCCTCG
LOC_Os10g28760
OsAffx.30578.2.S1_x_at--1159--5773Chr10:14674855..14674879 (25 bp)
GACGAGCTGGTGATCGCGCAGCACC
LOC_Os10g28760
OsAffx.30578.2.S1_x_at--477--1873Chr10:14674856..14674880 (25 bp)
ACGAGCTGGTGATCGCGCAGCACCT
LOC_Os10g28760
OsAffx.30578.2.S1_x_at--152--3913Chr10:14674861..14674885 (25 bp)
CTGGTGATCGCGCAGCACCTGCTCG
LOC_Os10g28760
OsAffx.30578.2.S1_x_at--668--4994Chr10:14674904..14674928 (25 bp)
GCATGGAGAGGCTCAAGCTGCTCTG
LOC_Os10g28760
OsAffx.30578.2.S1_x_at--198--3412Chr10:14674993..14675017 (25 bp)
CAGCACCATTGCCATGGGCTCAAGG
LOC_Os10g28760
OsAffx.30578.2.S1_x_at--195--7333Chr10:14675022..14675046 (25 bp)
GTGCTTCCGGTTCCTCGAGTCGAAG
LOC_Os10g28760
OsAffx.30578.2.S1_x_at--920--10653Chr10:14675032..14675056 (25 bp)
TTCCTCGAGTCGAAGGAGACGCTGA
LOC_Os10g28760
Target Sequence 
AGGCGGAGCTCTTCGGCCAGATGAAGGAGAGCAGCAGCAGCANNNACACNGTGNTGAACGTGGACGACATGGAGGCGGAG
GTGTTCAGGGCCCTCCTCGNCTTCATCTACACCNACGCGCTGCCGGAGACGAAGACGAAGGCGAANCANGAGGACGAGCT
GGTGATCGCGCAGCACCTGCTCGTCGNGGCGGACAGGTACGGCATGGAGAGGCTCAAGCTGCTCTGCGAGGAGAAGNTGG
TCGAGTNCATCGACCGGGGCTCGGNGGNGANGCTNATGGCGTTGGCNGAGCAGCACCATTGCCATGGGCTCAAGGNGGNG
TGCTTCCGGTTCCTCGAGTCGAAGGAGACGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30578.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis