Browse Element(s) Details


OsAffx.30580.1.S1_at

Description tigr:9638.m02450
TID=OsAffx.30580.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2881011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28724OsAffx.22848.4.S1_x_at1/1110+14663569..14667090retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g28724OsAffx.22848.3.S1_x_at1/1110+14663569..14667090retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g28740NANA10+14667436..14669515retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g28750NANA10+14672567..14673019transposon protein, putative, unclassified
LOC_Os10g28760OsAffx.30578.2.S1_x_at11/1110+14674030..14675178BTB/POZ domain containing protein
LOC_Os10g28760OsAffx.30578.1.S1_x_at4/1110+14674030..14675178BTB/POZ domain containing protein
LOC_Os10g28760OsAffx.30579.1.S1_x_at2/1110+14674030..14675178BTB/POZ domain containing protein
LOC_Os10g28760OsAffx.30579.1.S1_at1/1110+14674030..14675178BTB/POZ domain containing protein
LOC_Os10g28770OsAffx.30578.2.S1_x_at11/1110+14676765..14677883BTB/POZ domain containing protein
LOC_Os10g28770OsAffx.30578.1.S1_x_at4/1110+14676765..14677883BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30578.1.S1_at11/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30578.1.S1_x_at11/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30578.2.S1_x_at10/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30579.1.S1_x_at1/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28790OsAffx.30579.1.S1_x_at11/1110+14686132..14687253BTB/POZ domain containing protein
LOC_Os10g28790OsAffx.30579.1.S1_at11/1110+14686132..14687253BTB/POZ domain containing protein
LOC_Os10g28800NANA10+14688461..14689377hypothetical protein
LOC_Os10g28810OsAffx.30580.1.S1_at11/1110+14690522..14691709BTB/POZ domain containing protein
LOC_Os10g28820OsAffx.20331.1.S1_at11/1110+14696426..14697550BTB/POZ domain containing protein
LOC_Os10g28830OsAffx.8116.1.S1_at11/1110+14705000..14705534hypothetical protein
LOC_Os10g28840OsAffx.6801.1.S1_at11/1110+14706697..14707554BTB/POZ domain containing protein
LOC_Os10g28840OsAffx.18433.1.S1_x_at1/1110+14706697..14707554BTB/POZ domain containing protein
LOC_Os10g28850OsAffx.8115.1.S1_at11/1110+14709194..14711308hypothetical protein
LOC_Os10g28850OsAffx.14019.1.S1_at1/1110+14709194..14711308hypothetical protein
LOC_Os10g28860OsAffx.18433.1.S1_x_at11/1110+14714660..14715766BTB/POZ domain containing protein
LOC_Os10g28860OsAffx.18433.1.S1_at11/1110+14714660..14715766BTB/POZ domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30580.1.S1_at--100--9371Chr10:14690949..14690973 (25 bp)
TCGAGCCAGACGTGTTCAGGAACCT
LOC_Os10g28810
OsAffx.30580.1.S1_at--860--9631Chr10:14690934..14690958 (25 bp)
TCAGGAACCTGCTCACCTTCATGTA
LOC_Os10g28810
OsAffx.30580.1.S1_at--16--3371Chr10:14690909..14690933 (25 bp)
CACCGACACGTTGCCAGAGACAAAT
LOC_Os10g28810
OsAffx.30580.1.S1_at--989--4751Chr10:14690818..14690842 (25 bp)
GCTGCAATGGTCGAGCATCTGCTCA
LOC_Os10g28810
OsAffx.30580.1.S1_at--596--3891Chr10:14690740..14690764 (25 bp)
CTGTGCAAGCACATCGACGGCGAGT
LOC_Os10g28810
OsAffx.30580.1.S1_at--764--8471Chr10:14690712..14690736 (25 bp)
TGGCGACGATCTTGGCCTTGGCTGA
LOC_Os10g28810
OsAffx.30580.1.S1_at--44--6411Chr10:14690634..14690658 (25 bp)
GATCGGCTCTGAATTCTCTGGTGGC
LOC_Os10g28810
OsAffx.30580.1.S1_at--397--8451Chr10:14690612..14690636 (25 bp)
GGCCACCGATGGCATTGAGCATCTA
LOC_Os10g28810
OsAffx.30580.1.S1_at--464--451Chr10:14690592..14690616 (25 bp)
ATCTAGCTAGATGGTGCCCCTCTGT
LOC_Os10g28810
OsAffx.30580.1.S1_at--1067--8791Chr10:14690570..14690594 (25 bp)
TGTTCTCAACCAGCTCATGTCCAAG
LOC_Os10g28810
OsAffx.30580.1.S1_at--900--771Chr10:14690554..14690578 (25 bp)
ATGTCCAAGGTTGCTGCTCTTGTTC
LOC_Os10g28810
Target Sequence 
TCGAGCCAGACGTGTTCAGGAACCTGCTCACCTTCATGTACACCGACACGTTGCCAGAGACAAATCCACAAGAGCTGGAG
GAAGAAGAAGAAGACGACGACGACGACTACGAGGACGATCAAGCTCAAGCTGCTGCAATGGTCGAGCATCTGCTCATCGC
GGCGGACAGGTACAACCTGGAGAGGCTGAAGCTGATCTGCGAGGATAGGCTGTGCAAGCACATCGACGGCGAGTCCGTGG
CGACGATCTTGGCCTTGGCTGAGCAGCACAGCTGCGATGGGTTGAAGGAGGCGTGCTTCCAGTTCCTCAGCTCGCGATCG
GCTCTGAATTCTCTGGTGGCCACCGATGGCATTGAGCATCTAGCTAGATGGTGCCCCTCTGTTCTCAACCAGCTCATGTC
CAAGGTTGCTGCTCTTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30580.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis