Browse Element(s) Details


OsAffx.18433.1.S1_x_at

Description tigr:9638.m02455
TID=OsAffx.18433.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2886011/11BTB/POZ domain containing protein
LOC_Os10g288401/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28810OsAffx.30580.1.S1_at11/1110+14690522..14691709BTB/POZ domain containing protein
LOC_Os10g28820OsAffx.20331.1.S1_at11/1110+14696426..14697550BTB/POZ domain containing protein
LOC_Os10g28830OsAffx.8116.1.S1_at11/1110+14705000..14705534hypothetical protein
LOC_Os10g28840OsAffx.6801.1.S1_at11/1110+14706697..14707554BTB/POZ domain containing protein
LOC_Os10g28840OsAffx.18433.1.S1_x_at1/1110+14706697..14707554BTB/POZ domain containing protein
LOC_Os10g28850OsAffx.8115.1.S1_at11/1110+14709194..14711308hypothetical protein
LOC_Os10g28850OsAffx.14019.1.S1_at1/1110+14709194..14711308hypothetical protein
LOC_Os10g28860OsAffx.18433.1.S1_x_at11/1110+14714660..14715766BTB/POZ domain containing protein
LOC_Os10g28860OsAffx.18433.1.S1_at11/1110+14714660..14715766BTB/POZ domain containing protein
LOC_Os10g28870OsAffx.30581.1.S1_at10/1110+14718088..14719833BTB/POZ domain containing protein
LOC_Os10g28890NANA10+14722103..14726708retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g28900NANA10+14732430..14733020hypothetical protein
LOC_Os10g28910NANA10+14736245..14738265retrotransposon protein, putative, unclassified
LOC_Os10g28914NANA10+14740719..14741135hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18433.1.S1_x_at--291--4231Chr10:14715246..14715270 (25 bp)
CCGACGTCGAGTTCCGTGTCCGCGG
LOC_Os10g28860
OsAffx.18433.1.S1_x_at--61--9571Chr10:14715333..14715357 (25 bp)
TCTTCAAGGCTGAGCTCCTCGCCGG
LOC_Os10g28860
OsAffx.18433.1.S1_x_at--132--4511Chr10:14715383..14715407 (25 bp)
GCCGTCATCCAGATCGACGACATGG
LOC_Os10g28860
OsAffx.18433.1.S1_x_at--23--10531Chr10:14715419..14715443 (25 bp)
TTCAGGTCCTTGCTCCACTACATGT
LOC_Os10g28860
OsAffx.18433.1.S1_x_at--499--4531Chr10:14715488..14715512 (25 bp)
GCCGCCATGGCGCAGAACATGATCG
LOC_Os10g28860
OsAffx.18433.1.S1_x_at--741--1431Chr10:14715501..14715525 (25 bp)
AGAACATGATCGTCGCGGCGGACAG
LOC_Os10g28860
OsAffx.18433.1.S1_x_at--116--5651Chr10:14715560..14715584 (25 bp)
GACAGGCTGCGCAAGCACATCGGCG
LOC_Os10g28860
OsAffx.18433.1.S1_x_at--865--3311Chr10:14715575..14715599 (25 bp)
CACATCGGCGCGTCTTCGGTGGCGA
LOC_Os10g28860
OsAffx.18433.1.S1_x_at--339--9571Chr10:14715587..14715611 (25 bp)
TCTTCGGTGGCGACCATGCTGACGT
LOC_Os10g28860
OsAffx.18433.1.S1_x_at--958--9652Chr10:14715663..14715687 (25 bp)
TCAGCTCGCCGACGAATCTGAAGGC
LOC_Os10g28860
OsAffx.18433.1.S1_x_at--1113--4311Chr10:14715690..14715714 (25 bp)
CCATGGCTACCGATGGGTTTGGGCA
LOC_Os10g28860
Target Sequence 
CCGACGTCGAGTTCCGTGTCCGCGGCGCCGGCGGCGAGGAGGAGACGGTCGCCGCGCACCGTGTCGTGCTCGCGGCGCGG
TCGCCGGTCTTCAAGGCTGAGCTCCTCGCCGGCGTCCCTGCGAAGGACGGCGGCGGGGCCGTCATCCAGATCGACGACAT
GGACGCGGAGGTGTTCAGGTCCTTGCTCCACTACATGTACACCGACTCGCTGCCGCCGGAGAAGGGGACGACGCGGGAGG
AGGCCGCCATGGCGCAGAACATGATCGTCGCGGCGGACAGGTACAGCATGGAGACGCTGAAGCTGATGTGCGAGGACAGG
CTGCGCAAGCACATCGGCGCGTCTTCGGTGGCGACCATGCTGACGTTCGCCGACCGGCACCACTGCCATGGGCTCAGGGC
GGCGTGCACGGAGTTCCTCAGCTCGCCGACGAATCTGAAGGCCGCCATGGCTACCGATGGGTTTGGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18433.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis