Browse Element(s) Details


OsAffx.30581.1.S1_at

Description tigr:9638.m02456
TID=OsAffx.30581.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2887010/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28820OsAffx.20331.1.S1_at11/1110+14696426..14697550BTB/POZ domain containing protein
LOC_Os10g28830OsAffx.8116.1.S1_at11/1110+14705000..14705534hypothetical protein
LOC_Os10g28840OsAffx.6801.1.S1_at11/1110+14706697..14707554BTB/POZ domain containing protein
LOC_Os10g28840OsAffx.18433.1.S1_x_at1/1110+14706697..14707554BTB/POZ domain containing protein
LOC_Os10g28850OsAffx.8115.1.S1_at11/1110+14709194..14711308hypothetical protein
LOC_Os10g28850OsAffx.14019.1.S1_at1/1110+14709194..14711308hypothetical protein
LOC_Os10g28860OsAffx.18433.1.S1_x_at11/1110+14714660..14715766BTB/POZ domain containing protein
LOC_Os10g28860OsAffx.18433.1.S1_at11/1110+14714660..14715766BTB/POZ domain containing protein
LOC_Os10g28870OsAffx.30581.1.S1_at10/1110+14718088..14719833BTB/POZ domain containing protein
LOC_Os10g28890NANA10+14722103..14726708retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g28900NANA10+14732430..14733020hypothetical protein
LOC_Os10g28910NANA10+14736245..14738265retrotransposon protein, putative, unclassified
LOC_Os10g28914NANA10+14740719..14741135hypothetical protein
LOC_Os10g28920NANA10+14743889..14744482hypothetical protein
LOC_Os10g28930OsAffx.20329.1.S1_at11/1110+14744833..14749245retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30581.1.S1_at--1083--511Chr10:14719021..14719045 (25 bp)
ATCGACGGGAACAACTTCGAGGCCA
LOC_Os10g28870
OsAffx.30581.1.S1_at--261--9571Chr10:14719075..14719099 (25 bp)
TCTTGCCCATGGTTCAATCTTTCGT
LOC_Os10g28870
OsAffx.30581.1.S1_at--996--3051Chr10:14719090..14719114 (25 bp)
AATCTTTCGTTTTCGGCATTTGTAT
LOC_Os10g28870
OsAffx.30581.1.S1_at--945--10372Chr10:14719099..14719123 (25 bp)
TTTTCGGCATTTGTATCGGAGGGTG
LOC_Os10g28870
OsAffx.30581.1.S1_at--934--6131Chr10:14719117..14719141 (25 bp)
GAGGGTGCCGACATACCGAAATTTC
LOC_Os10g28870
OsAffx.30581.1.S1_at--197--4851NONE
GAAAATTTCGGGACAAGGGTCATGT
NONE
OsAffx.30581.1.S1_at--304--2891Chr10:14719708..14719732 (25 bp)
AAGGGTCATGTGGACAGTGGCCATC
LOC_Os10g28870
OsAffx.30581.1.S1_at--1124--8111Chr10:14719719..14719743 (25 bp)
GGACAGTGGCCATCCTAGATCAGAT
LOC_Os10g28870
OsAffx.30581.1.S1_at--313--10051Chr10:14719734..14719758 (25 bp)
TAGATCAGATGTGGCGCCGATGACT
LOC_Os10g28870
OsAffx.30581.1.S1_at--736--5671Chr10:14719755..14719779 (25 bp)
GACTAGCGGGAAGACCGGATCCAAT
LOC_Os10g28870
OsAffx.30581.1.S1_at--72--591Chr10:14719773..14719797 (25 bp)
ATCCAATGCCGGTGCTCGGATGGAG
LOC_Os10g28870
Target Sequence 
ATCGACGGGAACAACTTCGAGGCCACGCTGGCTTTGGCTGAGCAGCATCACTGCTCTTGCCCATGGTTCAATCTTTCGTT
TTCGGCATTTGTATCGGAGGGTGCCGACATACCGAAATTTCAGAAATTTCGAAAATTTCGGGACAAGGGTCATGTGGACA
GTGGCCATCCTAGATCAGATGTGGCGCCGATGACTAGCGGGAAGACCGGATCCAATGCCGGTGCTCGGATGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30581.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis